UHGV-0183658

Genome information

Genome length 22,133 bps

CDS count 30

Completeness 60.67% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0183658
vOTU ID	vOTU-029394
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595566
BioSample	SAMN09781757
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.24
Jumbo phage	No

Genome content
Genome length	22,133 bps
GC content	50.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	95.75%
Average CDS length	710.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0183658_1	UniRef90	UniRef90_A0A316RBI4	HTH cro/C1-type domain-containing protein	NA
UHGV-0183658_1	eggNOG-mapper	1297617.JPJD01000059_gene2644	addiction module antidote protein HigA	NA
UHGV-0183658_1	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0183658_1	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0183658_2	PHROG	phrog_87	metallo-protease	other
UHGV-0183658_2	UniRef90	UniRef90_R6EG79	Peptidase_M78 domain-containing protein	NA
UHGV-0183658_2	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-0183658_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0183658_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0183658_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0183658_3	eggNOG-mapper	411470.RUMGNA_02091	NA	NA
UHGV-0183658_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0183658_4	PHROG	phrog_95	integrase	integration and excision
UHGV-0183658_4	UniRef90	UniRef90_UPI00189960B8	recombinase family protein	NA
UHGV-0183658_4	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-0183658_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0183658_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-0183658_4	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0183658_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0183658_4	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0183658_6	UniRef90	UniRef90_A0A351F9G2	RHH_1 domain-containing protein	NA
UHGV-0183658_6	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0183658_7	Structural annotation	COG1859	NA	NA
UHGV-0183658_9	PHROG	phrog_263	holin	lysis
UHGV-0183658_9	UniRef90	UniRef90_A0A3D5TN47	Phage holin	NA
UHGV-0183658_9	eggNOG-mapper	315750.BPUM_3085	SPP1 phage holin	NA
UHGV-0183658_9	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0183658_9	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0183658_9	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0183658_10	PHROG	phrog_9428	NA	unknown function
UHGV-0183658_10	UniRef90	UniRef90_A0A3D5TMQ6	Serine/threonine protein kinase	NA
UHGV-0183658_10	eggNOG-mapper	1519439.JPJG01000059_gene1948	NA	NA
UHGV-0183658_11	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0183658_11	PHROG	phrog_435	endolysin	lysis
UHGV-0183658_11	UniRef90	UniRef90_A0A3D5TMB6	MurNAc-LAA domain-containing protein	NA
UHGV-0183658_11	eggNOG-mapper	658659.HMPREF0983_03290	lysozyme activity	NA
UHGV-0183658_11	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0183658_11	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0183658_11	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-0183658_12	PHROG	phrog_27545	NA	unknown function
UHGV-0183658_12	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-0183658_12	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0183658_15	UniRef90	UniRef90_R6HYD9	Collagen triple helix repeat protein	NA
UHGV-0183658_15	Structural annotation	PF08481	NA	NA
UHGV-0183658_17	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0183658_17	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0183658_17	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0183658_17	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0183658_17	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0183658_17	COG	COG4926	Phage-related protein	NA
UHGV-0183658_17	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0183658_18	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0183658_18	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-0183658_18	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0183658_18	COG	COG4722	Phage-related protein YomH	NA
UHGV-0183658_18	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0183658_19	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0183658_19	UniRef90	UniRef90_A0A316QKN8	Phage tail protein (Fragment)	NA
UHGV-0183658_19	eggNOG-mapper	394503.Ccel_2825	tape measure	NA
UHGV-0183658_19	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0183658_19	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0183658_20	PHROG	phrog_2115	tail protein	tail
UHGV-0183658_20	Structural annotation	PF11836	NA	NA
UHGV-0183658_21	PHROG	phrog_88	major tail protein	tail
UHGV-0183658_21	UniRef90	UniRef90_UPI001D07B441	major tail protein	NA
UHGV-0183658_21	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0183658_21	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0183658_21	COG	COG5492	NA	NA
UHGV-0183658_21	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0183658_22	PHROG	phrog_78	tail terminator	connector
UHGV-0183658_22	eggNOG-mapper	1238184.CM001792_gene2512	NA	NA
UHGV-0183658_22	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0183658_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0183658_23	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-0183658_23	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-0183658_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0183658_23	Structural annotation	TIGR01725	NA	NA
UHGV-0183658_24	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0183658_24	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-0183658_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0183658_24	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0183658_25	UniRef90	UniRef90_UPI0006544DF9	head-tail connector protein	NA
UHGV-0183658_25	eggNOG-mapper	1274524.BSONL12_06143	Phage gp6-like head-tail connector protein	NA
UHGV-0183658_25	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0183658_25	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0183658_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0183658_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0183658_26	UniRef90	UniRef90_UPI000C7BECD8	phage major capsid protein	NA
UHGV-0183658_26	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-0183658_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0183658_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0183658_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0183658_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0183658_27	PHROG	phrog_16951	NA	unknown function
UHGV-0183658_27	eggNOG-mapper	246199.CUS_7602	NA	NA
UHGV-0183658_27	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0183658_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0183658_28	UniRef90	UniRef90_UPI001C11FE4E	phage portal protein	NA
UHGV-0183658_28	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-0183658_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0183658_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0183658_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0183658_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0183658_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0183658_29	UniRef90	UniRef90_UPI000C7CE66A	terminase large subunit	NA
UHGV-0183658_29	eggNOG-mapper	742738.HMPREF9460_04067	Phage terminase-like protein large subunit	NA
UHGV-0183658_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0183658_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0183658_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0183658_29	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0183658_30	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0183658_30	UniRef90	UniRef90_A0A6B3X8N9	Phage terminase small subunit P27 family	NA
UHGV-0183658_30	eggNOG-mapper	536232.CLM_2059	Phage terminase, small subunit	NA
UHGV-0183658_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0183658_30	COG	COG3747	Phage terminase, small subunit	NA