UHGV-0183664

Genome information

Genome length 45,809 bps

CDS count 74

Completeness 100.00% (complete)

geNomad score 0.9707

Prediction confidence Confident

Genome information
Genome ID	UHGV-0183664
vOTU ID	vOTU-046810
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596848
BioSample	SAMN09781785
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9707
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.82
Jumbo phage	No

Genome content
Genome length	45,809 bps
GC content	32.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	88.90%
Average CDS length	552.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0183664_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0183664_1	PHROG	phrog_7698	endolysin	lysis
UHGV-0183664_1	UniRef90	UniRef90_A0A413UF85	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0183664_1	eggNOG-mapper	293826.Amet_2548	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0183664_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0183664_1	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0183664_1	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0183664_1	Structural annotation	PF01510, PF18342, PF08239, MF_04111, NF040670, NF008758, COG5632	NA	NA
UHGV-0183664_3	PHROG	phrog_443	holin	lysis
UHGV-0183664_3	UniRef90	UniRef90_A0A2U2ELA1	Membrane protein	NA
UHGV-0183664_3	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-0183664_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0183664_3	Structural annotation	PF16945	NA	NA
UHGV-0183664_5	PHROG	phrog_20016	NA	unknown function
UHGV-0183664_5	UniRef90	UniRef90_A0A395WF88	BclA_C domain-containing protein	NA
UHGV-0183664_5	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0183664_5	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0183664_6	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-0183664_6	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0183664_13	PHROG	phrog_19280	NA	unknown function
UHGV-0183664_13	UniRef90	UniRef90_A0A413UF00	NA	NA
UHGV-0183664_13	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0183664_13	Pfam	PF19789	NA	DUF6273
UHGV-0183664_13	Structural annotation	PF19789	NA	NA
UHGV-0183664_15	Structural annotation	PF16407, TIGR02657, COG3794	NA	NA
UHGV-0183664_16	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-0183664_17	Structural annotation	PF10651, COG5513	NA	NA
UHGV-0183664_18	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0183664_18	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0183664_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0183664_18	COG	COG4926	Phage-related protein	NA
UHGV-0183664_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0183664_19	Structural annotation	PF05939, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0183664_20	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0183664_20	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0183664_20	UniRef90	UniRef90_A0A395WD11	Phage tail tape measure protein	NA
UHGV-0183664_20	eggNOG-mapper	423476.A3F654_9CAUD	peptidoglycan catabolic process	NA
UHGV-0183664_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0183664_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0183664_20	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280	NA	NA
UHGV-0183664_21	PHROG	phrog_3033	NA	unknown function
UHGV-0183664_22	Structural annotation	PF11836	NA	NA
UHGV-0183664_23	PHROG	phrog_88	major tail protein	tail
UHGV-0183664_23	UniRef90	UniRef90_A0A395WA58	Phage tail protein	NA
UHGV-0183664_23	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-0183664_23	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0183664_23	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0183664_24	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-0183664_24	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0183664_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0183664_24	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0183664_25	UniRef90	UniRef90_C3DN78	Prophage pi2 protein 38	NA
UHGV-0183664_25	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0183664_26	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0183664_26	UniRef90	UniRef90_A0A395WC07	Head-tail adaptor protein	NA
UHGV-0183664_26	eggNOG-mapper	588581.Cpap_1270	NA	NA
UHGV-0183664_26	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0183664_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0183664_27	PHROG	phrog_5223	neck protein	connector
UHGV-0183664_27	UniRef90	UniRef90_A0A374RXD1	DNA-packaging protein	NA
UHGV-0183664_27	Structural annotation	TIGR01560	NA	NA
UHGV-0183664_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0183664_28	UniRef90	UniRef90_A0A395WF70	Phage major capsid protein	NA
UHGV-0183664_28	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0183664_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0183664_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0183664_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0183664_28	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0183664_29	KOfam	K06904	NA	NA
UHGV-0183664_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0183664_29	UniRef90	UniRef90_A0A413UET6	HK97 family phage prohead protease	NA
UHGV-0183664_29	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-0183664_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0183664_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0183664_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0183664_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0183664_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0183664_30	UniRef90	UniRef90_A0A395W9X2	Phage portal protein	NA
UHGV-0183664_30	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-0183664_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0183664_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0183664_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0183664_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0183664_31	UniRef90	UniRef90_A0A395WD03	Terminase large subunit	NA
UHGV-0183664_31	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0183664_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0183664_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0183664_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0183664_31	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0183664_32	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0183664_32	UniRef90	UniRef90_A0A7C6YMQ8	P27 family phage terminase small subunit	NA
UHGV-0183664_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0183664_32	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0183664_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0183664_33	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0183664_33	UniRef90	UniRef90_A0A395WA48	HNH endonuclease	NA
UHGV-0183664_33	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-0183664_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0183664_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0183664_34	UniRef90	UniRef90_A0A395WDY7	HTH_8 domain-containing protein	NA
UHGV-0183664_34	eggNOG-mapper	1145276.T479_12115	Helix-turn-helix domain	NA
UHGV-0183664_39	eggNOG-mapper	592031.GCWU000322_00057	NA	NA
UHGV-0183664_45	PHROG	phrog_2316	NA	unknown function
UHGV-0183664_45	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0183664_45	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-0183664_45	Structural annotation	PF16475, MF_00436, NF033216	NA	NA
UHGV-0183664_46	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0183664_46	UniRef90	UniRef90_A0A0J8Z1B9	Prophage pi1 protein 29	NA
UHGV-0183664_46	eggNOG-mapper	272623.L62008	NA	NA
UHGV-0183664_47	UniRef90	UniRef90_A0A413UEX6	NA	NA
UHGV-0183664_47	Structural annotation	PF07374, NF008895	NA	NA
UHGV-0183664_51	PHROG	phrog_15198	NA	unknown function
UHGV-0183664_51	UniRef90	UniRef90_A0A395WBY6	NA	NA
UHGV-0183664_51	Pfam	PF04448	NA	DUF551
UHGV-0183664_52	Structural annotation	PF17399	NA	NA
UHGV-0183664_56	Structural annotation	PF17888	NA	NA
UHGV-0183664_57	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0183664_57	UniRef90	UniRef90_UPI001C25836D	dUTPase	NA
UHGV-0183664_57	eggNOG-mapper	218284.CCDN010000001_gene545	dUTPase	NA
UHGV-0183664_57	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0183664_57	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0183664_57	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0183664_58	PHROG	phrog_2715	NA	unknown function
UHGV-0183664_58	eggNOG-mapper	642492.Clole_0950	NA	NA
UHGV-0183664_58	Structural annotation	PF18406	NA	NA
UHGV-0183664_59	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0183664_59	eggNOG-mapper	428127.EUBDOL_01513	NA	NA
UHGV-0183664_59	AcrCatalog	cluster_47493	NA	NA
UHGV-0183664_59	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-0183664_62	UniRef90	UniRef90_R6T064	NUMOD4 domain-containing protein	NA
UHGV-0183664_62	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0183664_63	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0183664_63	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0183664_63	UniRef90	UniRef90_A0A395WER8	Bac_DnaA domain-containing protein	NA
UHGV-0183664_63	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-0183664_63	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0183664_63	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0183664_63	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0183664_64	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0183664_64	UniRef90	UniRef90_A0A395WBX6	Phg_2220_C domain-containing protein	NA
UHGV-0183664_64	eggNOG-mapper	279808.SH2379	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0183664_64	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0183664_64	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0183664_64	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0183664_64	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0183664_66	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0183664_66	PHROG	phrog_1	integrase	integration and excision
UHGV-0183664_66	UniRef90	UniRef90_A0A395W9T7	Site-specific integrase	NA
UHGV-0183664_66	eggNOG-mapper	908340.HMPREF9406_2589	Belongs to the 'phage' integrase family	NA
UHGV-0183664_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0183664_66	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0183664_66	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0183664_70	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0183664_70	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0183664_70	UniRef90	UniRef90_A0A395WA05	XRE family transcriptional regulator	NA
UHGV-0183664_70	eggNOG-mapper	999413.HMPREF1094_02045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0183664_70	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183664_70	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0183664_70	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0183664_71	UniRef90	UniRef90_A0A4R1RC20	Putative heavy-metal-binding protein	NA
UHGV-0183664_71	eggNOG-mapper	517418.Ctha_1419	Putative heavy-metal-binding	NA
UHGV-0183664_71	Pfam	PF01906	Putative heavy-metal-binding	YbjQ_1
UHGV-0183664_71	COG	COG0393	NA	NA
UHGV-0183664_72	PHROG	phrog_5059	NA	unknown function
UHGV-0183664_72	UniRef90	UniRef90_A0A395WDV4	NA	NA
UHGV-0183664_72	eggNOG-mapper	1232446.BAIE02000002_gene792	NA	NA
UHGV-0183664_72	Pfam	PF08861	NA	DUF1828
UHGV-0183664_72	Pfam	PF08862	NA	DUF1829
UHGV-0183664_72	Structural annotation	PF08862, PF08861, MF_00722, COG3372	NA	NA
UHGV-0183664_73	PHROG	phrog_21094	NA	unknown function
UHGV-0183664_73	UniRef90	UniRef90_A0A2A2EE23	NA	NA
UHGV-0183664_73	eggNOG-mapper	428127.EUBDOL_01263	NA	NA
UHGV-0183664_74	KOfam	K14059	int; integrase	NA
UHGV-0183664_74	PHROG	phrog_1	integrase	integration and excision
UHGV-0183664_74	UniRef90	UniRef90_A0A395WBW7	Site-specific integrase	NA
UHGV-0183664_74	eggNOG-mapper	1235796.C815_00955	DNA integration	NA
UHGV-0183664_74	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0183664_74	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0183664_74	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA