UHGV-0183676

Genome information

Genome length 42,754 bps

CDS count 68

Completeness 100.00% (complete)

geNomad score 0.9721

Prediction confidence Confident

Genome information
Genome ID	UHGV-0183676
vOTU ID	vOTU-005633
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596847
BioSample	SAMN09781785
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9721
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.37
Jumbo phage	No

Genome content
Genome length	42,754 bps
GC content	48.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	91.60%
Average CDS length	578.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0183676_1	PHROG	phrog_7964	NA	unknown function
UHGV-0183676_1	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0183676_1	Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	Hexapep
UHGV-0183676_1	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0183676_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0183676_1	Structural annotation	MF_01691, TIGR03532, COG2171	NA	NA
UHGV-0183676_5	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0183676_5	UniRef90	UniRef90_A0A3E2U1Y9	DNA cytosine methyltransferase	NA
UHGV-0183676_5	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0183676_5	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0183676_5	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0183676_6	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0183676_6	UniRef90	UniRef90_A0A843HUJ5	NA	NA
UHGV-0183676_6	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0183676_6	Pfam	PF06378	NA	DUF1071
UHGV-0183676_6	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0183676_7	PHROG	phrog_1389	NA	unknown function
UHGV-0183676_7	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-0183676_7	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0183676_8	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0183676_8	UniRef90	UniRef90_A0A2A7R177	HNH endonuclease	NA
UHGV-0183676_8	eggNOG-mapper	1423814.HMPREF0549_1779	NUMOD4 motif	NA
UHGV-0183676_8	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0183676_8	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0183676_8	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0183676_8	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0183676_9	PHROG	phrog_7566	NA	unknown function
UHGV-0183676_9	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0183676_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0183676_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0183676_11	UniRef90	UniRef90_A0A2A7ALU9	Single-stranded DNA-binding protein	NA
UHGV-0183676_11	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0183676_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0183676_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0183676_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0183676_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0183676_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0183676_15	PHROG	phrog_1163	NA	unknown function
UHGV-0183676_15	UniRef90	UniRef90_UPI000246CFAE	conserved phage C-terminal domain-containing protein	NA
UHGV-0183676_15	eggNOG-mapper	762051.LKI_09560	DnaD domain protein	NA
UHGV-0183676_15	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0183676_15	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0183676_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0183676_15	Structural annotation	PF07261, PF09681, TIGR01446, TIGR01714, COG3935	NA	NA
UHGV-0183676_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0183676_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0183676_16	UniRef90	UniRef90_A0A3A5TME7	AAA family ATPase	NA
UHGV-0183676_16	eggNOG-mapper	428125.CLOLEP_03477	NA	NA
UHGV-0183676_16	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0183676_16	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0183676_16	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0183676_16	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0183676_19	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0183676_19	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0183676_19	UniRef90	UniRef90_A0A7X3MFG0	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0183676_19	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0183676_19	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0183676_19	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0183676_19	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0183676_19	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0183676_21	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0183676_21	UniRef90	UniRef90_UPI00164AE2A5	NA	NA
UHGV-0183676_21	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0183676_21	Pfam	PF06356	NA	DUF1064
UHGV-0183676_21	Structural annotation	PF06356	NA	NA
UHGV-0183676_23	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0183676_24	Structural annotation	PF02888	NA	NA
UHGV-0183676_26	UniRef90	UniRef90_Q5YA82	28	NA
UHGV-0183676_31	Structural annotation	PF17917	NA	NA
UHGV-0183676_34	PHROG	phrog_15863	NA	unknown function
UHGV-0183676_34	UniRef90	UniRef90_UPI0018766E78	J domain-containing protein	NA
UHGV-0183676_34	eggNOG-mapper	558152.IQ37_05720	Heat shock protein DnaJ domain protein	NA
UHGV-0183676_34	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0183676_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0183676_36	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0183676_36	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-0183676_36	eggNOG-mapper	316274.Haur_0564	NA	NA
UHGV-0183676_36	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0183676_36	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0183676_38	PHROG	phrog_156	portal protein	head and packaging
UHGV-0183676_38	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0183676_38	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0183676_40	PHROG	phrog_35275	NA	unknown function
UHGV-0183676_40	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-0183676_41	PHROG	phrog_371	major head protein	head and packaging
UHGV-0183676_41	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0183676_41	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0183676_41	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0183676_43	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0183676_43	Structural annotation	PF20387	NA	NA
UHGV-0183676_44	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0183676_44	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0183676_44	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0183676_45	eggNOG-mapper	665956.HMPREF1032_03918	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-0183676_48	KOfam	K07273	acm; lysozyme	NA
UHGV-0183676_48	PHROG	phrog_291	endolysin	lysis
UHGV-0183676_48	UniRef90	UniRef90_A0A4R1QM33	GH25 family lysozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0183676_48	eggNOG-mapper	537013.CLOSTMETH_01756	hydrolase, family 25	NA
UHGV-0183676_48	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0183676_48	COG	COG1388	LysM repeat	NA
UHGV-0183676_48	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0183676_49	PHROG	phrog_937	hemolysin	other
UHGV-0183676_49	eggNOG-mapper	1297617.JPJD01000099_gene2176	NA	NA
UHGV-0183676_50	PHROG	phrog_1129	holin	lysis
UHGV-0183676_50	UniRef90	UniRef90_A0A1G9U2I2	Phage holin family Hol44, holin superfamily V	NA
UHGV-0183676_50	eggNOG-mapper	537013.CLOSTMETH_03774	NA	NA
UHGV-0183676_50	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0183676_50	Structural annotation	PF16079	NA	NA
UHGV-0183676_52	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0183676_53	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0183676_56	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0183676_56	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0183676_56	UniRef90	UniRef90_UPI001D09C776	phage antirepressor KilAC domain-containing protein	NA
UHGV-0183676_56	eggNOG-mapper	386415.NT01CX_2199	Phage antirepressor protein	NA
UHGV-0183676_56	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0183676_56	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0183676_56	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0183676_56	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0183676_60	KOfam	K14059	int; integrase	NA
UHGV-0183676_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0183676_60	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0183676_60	eggNOG-mapper	1519439.JPJG01000011_gene49	Phage integrase family	NA
UHGV-0183676_60	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0183676_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0183676_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0183676_60	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0183676_61	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0183676_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183676_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0183676_61	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0183676_63	eggNOG-mapper	1410653.JHVC01000032_gene1036	domain protein	NA
UHGV-0183676_63	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0183676_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183676_64	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0183676_64	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0183676_65	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0183676_65	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0183676_65	eggNOG-mapper	642492.Clole_1825	sequence-specific DNA binding	NA
UHGV-0183676_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183676_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0183676_65	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0183676_67	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0183676_67	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0183676_67	UniRef90	UniRef90_A0A252F729	Bro-N domain-containing protein	NA
UHGV-0183676_67	eggNOG-mapper	1122146.AUHP01000010_gene1023	BRO family, N-terminal domain	NA
UHGV-0183676_67	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0183676_67	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0183676_67	COG	COG3617	Prophage antirepressor	NA
UHGV-0183676_67	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0183676_68	PHROG	phrog_5070	NA	unknown function
UHGV-0183676_68	eggNOG-mapper	1094556.MCY_01121	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0183676_68	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0183676_68	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0183676_68	Structural annotation	NF040481	NA	NA