UHGV-0183826

Genome information

Genome length 34,664 bps

CDS count 48

Completeness 98.10% (high-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0183826
vOTU ID	vOTU-064615
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2580189_a1_ct47335_vs1@Siphoviridae__sp._ctttd1
BioSample	SAMEA2580189
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.10% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.28
Jumbo phage	No

Genome content
Genome length	34,664 bps
GC content	42.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	90.21%
Average CDS length	655.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0183826_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0183826_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0183826_1	UniRef90	UniRef90_A0A374E9M4	Recombinase family protein	NA
UHGV-0183826_1	eggNOG-mapper	97139.C824_00068	Recombinase	NA
UHGV-0183826_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0183826_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0183826_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0183826_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0183826_2	PHROG	phrog_10934	NA	unknown function
UHGV-0183826_2	eggNOG-mapper	742722.HMPREF9463_00385	NA	NA
UHGV-0183826_3	KOfam	K10716	kch, trkA, mthK, pch; voltage-gated potassium channel	NA
UHGV-0183826_3	PHROG	phrog_7872	NA	unknown function
UHGV-0183826_3	UniRef90	UniRef90_D4M567	Ion channel	NA
UHGV-0183826_3	eggNOG-mapper	411459.RUMOBE_00964	Ion channel	NA
UHGV-0183826_3	Pfam	PF07885	Ion channel	Ion_trans_2
UHGV-0183826_3	COG	COG1226	Voltage-gated potassium channel Kch	NA
UHGV-0183826_4	PHROG	phrog_7872	NA	unknown function
UHGV-0183826_4	UniRef90	UniRef90_A0A2T3F770	Ion_trans domain-containing protein	NA
UHGV-0183826_4	eggNOG-mapper	411459.RUMOBE_00964	Ion channel	NA
UHGV-0183826_4	Pfam	PF00520	Ion transport protein	Ion_trans
UHGV-0183826_4	COG	COG1226	Voltage-gated potassium channel Kch	NA
UHGV-0183826_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0183826_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0183826_6	UniRef90	UniRef90_A0A374EB41	XRE family transcriptional regulator	NA
UHGV-0183826_6	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0183826_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183826_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0183826_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0183826_9	PHROG	phrog_20330	NA	unknown function
UHGV-0183826_9	eggNOG-mapper	565664.EFXG_02669	NA	NA
UHGV-0183826_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0183826_12	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-0183826_12	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0183826_13	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0183826_13	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0183826_13	UniRef90	UniRef90_A0A844KCI1	Ribonuclease HI	NA
UHGV-0183826_13	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-0183826_13	Pfam	PF00075	RNase H	RNase_H
UHGV-0183826_13	COG	COG0328	Ribonuclease HI	NA
UHGV-0183826_13	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0183826_14	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0183826_15	PHROG	phrog_4433	NA	unknown function
UHGV-0183826_15	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-0183826_16	PHROG	phrog_8470	NA	unknown function
UHGV-0183826_16	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0183826_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0183826_20	UniRef90	UniRef90_UPI001899709D	NA	NA
UHGV-0183826_20	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0183826_20	Pfam	PF07374	NA	DUF1492
UHGV-0183826_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0183826_20	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0183826_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0183826_21	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0183826_21	UniRef90	UniRef90_A0A1Q6K9L9	HNHc domain-containing protein	NA
UHGV-0183826_21	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0183826_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0183826_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0183826_22	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0183826_22	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0183826_22	eggNOG-mapper	1220589.CD32_01745	Phage terminase, small subunit	NA
UHGV-0183826_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0183826_22	COG	COG5484	NA	NA
UHGV-0183826_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0183826_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0183826_23	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0183826_23	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0183826_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0183826_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0183826_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0183826_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0183826_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0183826_24	UniRef90	UniRef90_A0A844KEF3	Phage portal protein	NA
UHGV-0183826_24	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0183826_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0183826_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0183826_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0183826_25	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0183826_25	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0183826_25	UniRef90	UniRef90_D4M590	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0183826_25	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0183826_25	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0183826_25	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0183826_25	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0183826_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0183826_26	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-0183826_26	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0183826_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0183826_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0183826_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0183826_26	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0183826_27	PHROG	phrog_749	NA	unknown function
UHGV-0183826_28	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0183826_28	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0183826_29	Structural annotation	PF05657	NA	NA
UHGV-0183826_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0183826_30	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0183826_30	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0183826_30	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0183826_31	PHROG	phrog_88	major tail protein	tail
UHGV-0183826_31	UniRef90	UniRef90_D4M596	Phage major tail protein, phi13 family	NA
UHGV-0183826_31	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0183826_31	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0183826_31	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0183826_33	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0183826_33	UniRef90	UniRef90_A0A373N7M8	PhageMin_Tail domain-containing protein	NA
UHGV-0183826_33	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0183826_33	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0183826_33	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0183826_33	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0183826_34	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0183826_34	UniRef90	UniRef90_UPI001570C170	phage tail protein	NA
UHGV-0183826_34	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0183826_34	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0183826_34	COG	COG4722	Phage-related protein YomH	NA
UHGV-0183826_34	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0183826_35	PHROG	phrog_13289	tail protein	tail
UHGV-0183826_35	UniRef90	UniRef90_A0A1Q6KA70	Prophage_tail domain-containing protein	NA
UHGV-0183826_35	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0183826_35	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0183826_35	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0183826_35	COG	COG4926	Phage-related protein	NA
UHGV-0183826_35	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0183826_36	PHROG	phrog_14030	NA	unknown function
UHGV-0183826_36	UniRef90	UniRef90_A0A1Q6K9M8	NlpC/P60 domain-containing protein	NA
UHGV-0183826_36	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0183826_36	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0183826_36	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0183826_36	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0183826_36	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0183826_37	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0183826_37	COG	COG4675	Phage tail collar domain	NA
UHGV-0183826_38	PHROG	phrog_16164	NA	unknown function
UHGV-0183826_38	eggNOG-mapper	742733.HMPREF9469_01804	NA	NA
UHGV-0183826_38	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0183826_40	PHROG	phrog_17147	NA	unknown function
UHGV-0183826_40	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-0183826_40	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-0183826_41	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0183826_41	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0183826_41	UniRef90	UniRef90_A0A1C5N0E2	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0183826_41	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0183826_41	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0183826_41	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0183826_41	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0183826_43	UniRef90	UniRef90_A0A5S4VUR2	XkdX family protein	NA
UHGV-0183826_43	eggNOG-mapper	411468.CLOSCI_01507	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0183826_43	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0183826_43	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0183826_44	PHROG	phrog_1863	NA	unknown function
UHGV-0183826_44	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0183826_45	PHROG	phrog_18218	NA	unknown function
UHGV-0183826_45	UniRef90	UniRef90_A0A373SUI3	Ribonuclease	NA
UHGV-0183826_45	eggNOG-mapper	658655.HMPREF0988_02546	NA	NA
UHGV-0183826_45	Structural annotation	PF06946	NA	NA
UHGV-0183826_46	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0183826_46	PHROG	phrog_435	endolysin	lysis
UHGV-0183826_46	UniRef90	UniRef90_A0A173ZE93	Autolysin	NA
UHGV-0183826_46	eggNOG-mapper	1235798.C817_02562	dextransucrase activity	NA
UHGV-0183826_46	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0183826_46	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0183826_46	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0183826_46	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0183826_46	Structural annotation	PF01520, PF19127, MF_00417, TIGR02883, TIGR04035, COG0860	NA	NA
UHGV-0183826_47	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-0183826_47	PHROG	phrog_7573	NA	unknown function
UHGV-0183826_47	UniRef90	UniRef90_A0A373N7L9	Manganese catalase family protein	NA
UHGV-0183826_47	eggNOG-mapper	411460.RUMTOR_00841	NA	NA
UHGV-0183826_47	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-0183826_47	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-0183826_47	Structural annotation	PF02185, MF_01506, TIGR04535, COG3546	NA	NA
UHGV-0183826_48	KOfam	K01953	asnB, ASNS; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]	NA
UHGV-0183826_48	PHROG	phrog_16728	NA	unknown function
UHGV-0183826_48	UniRef90	UniRef90_F7JQ04	Glutamine amidotransferase type-2 domain-containing protein	NA
UHGV-0183826_48	eggNOG-mapper	1232453.BAIF02000060_gene1746	Asparagine synthase	NA
UHGV-0183826_48	Pfam	PF13522	Glutamine amidotransferase domain	GATase_6
UHGV-0183826_48	COG	COG0367	Asparagine synthetase B (glutamine-hydrolyzing)	NA