UHGV-0183834

Genome information

vOTU vOTU-019856

Genome length 36,869 bps

CDS count 64

Completeness 51.12% (medium-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-0183834
vOTU ID	vOTU-019856
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA1906577_a1_ct54791_vs1@Siphoviridae__sp._ctqd01
BioSample	SAMEA1906577
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	51.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.81
Jumbo phage	No

Genome content
Genome length	36,869 bps
GC content	29.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	91.28%
Average CDS length	529.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0183834_1	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0183834_1	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0183834_1	UniRef90	UniRef90_A0A1Q6LE53	HTH cro/C1-type domain-containing protein	NA
UHGV-0183834_1	eggNOG-mapper	1157490.EL26_15215	sequence-specific DNA binding	NA
UHGV-0183834_1	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0183834_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183834_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0183834_1	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0183834_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0183834_2	UniRef90	UniRef90_A0A1Q6LE94	HTH cro/C1-type domain-containing protein	NA
UHGV-0183834_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183834_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0183834_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0183834_6	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0183834_6	UniRef90	UniRef90_A0A521X8B7	Siphovirus Gp157 family protein	NA
UHGV-0183834_6	eggNOG-mapper	686340.Metal_4000	PFAM Siphovirus Gp157	NA
UHGV-0183834_6	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0183834_6	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0183834_7	PHROG	phrog_14970	NA	unknown function
UHGV-0183834_7	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-0183834_7	eggNOG-mapper	469604.HMPREF0946_00830	DNA recombination	NA
UHGV-0183834_7	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0183834_7	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0183834_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0183834_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0183834_8	UniRef90	UniRef90_R6XT61	Single-stranded DNA-binding protein	NA
UHGV-0183834_8	eggNOG-mapper	1291050.JAGE01000001_gene1719	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0183834_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0183834_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0183834_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0183834_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0183834_8	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0183834_9	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0183834_9	eggNOG-mapper	445972.ANACOL_00148	NA	NA
UHGV-0183834_9	Pfam	PF05772	NinB protein	NinB
UHGV-0183834_9	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0183834_10	PHROG	phrog_7566	NA	unknown function
UHGV-0183834_10	UniRef90	UniRef90_A0A1V5HS54	HNH domain-containing protein	NA
UHGV-0183834_12	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0183834_12	UniRef90	UniRef90_UPI001C124D77	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0183834_12	eggNOG-mapper	632292.Calhy_0413	NA	NA
UHGV-0183834_12	Structural annotation	PF01475, TIGR01610, COG0735	NA	NA
UHGV-0183834_13	PHROG	phrog_9804	NA	unknown function
UHGV-0183834_13	UniRef90	UniRef90_A0A1I2QMA2	Loader and inhibitor of phage G40P	NA
UHGV-0183834_13	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0183834_13	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0183834_13	Structural annotation	PF11417	NA	NA
UHGV-0183834_14	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0183834_14	UniRef90	UniRef90_UPI001956B1A6	NUMOD4 domain-containing protein	NA
UHGV-0183834_14	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0183834_14	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0183834_14	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0183834_14	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-0183834_15	PHROG	phrog_1123	NA	unknown function
UHGV-0183834_15	UniRef90	UniRef90_UPI0012E37870	DNA gyrase	NA
UHGV-0183834_15	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-0183834_15	Structural annotation	PF02002, TIGR03433, COG1695	NA	NA
UHGV-0183834_16	eggNOG-mapper	1304866.K413DRAFT_4602	NA	NA
UHGV-0183834_17	PHROG	phrog_4601	NA	unknown function
UHGV-0183834_19	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0183834_19	eggNOG-mapper	1280692.AUJL01000044_gene2344	NA	NA
UHGV-0183834_19	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0183834_21	Structural annotation	PF09871, TIGR00739, COG4014	NA	NA
UHGV-0183834_22	PHROG	phrog_19831	NA	unknown function
UHGV-0183834_23	PHROG	phrog_98	NA	unknown function
UHGV-0183834_23	UniRef90	UniRef90_UPI00148DB53D	YopX family protein	NA
UHGV-0183834_23	eggNOG-mapper	294382.Q5YA89_9CAUD	YopX protein	NA
UHGV-0183834_23	Pfam	PF09643	YopX protein	YopX
UHGV-0183834_23	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0183834_23	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0183834_24	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0183834_24	UniRef90	UniRef90_A0A650EVM4	HNH homing endonuclease	NA
UHGV-0183834_24	eggNOG-mapper	213769.Q09WT2_9CAUD	HNH endonuclease	NA
UHGV-0183834_24	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0183834_24	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0183834_33	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0183834_34	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0183834_34	PHROG	phrog_33232	NA	unknown function
UHGV-0183834_34	UniRef90	UniRef90_R5NQV3	HicB-like domain-containing protein	NA
UHGV-0183834_34	eggNOG-mapper	97138.C820_00752	HicB family	NA
UHGV-0183834_34	Pfam	PF21748	UPF0150-like	UPF0150
UHGV-0183834_34	Pfam	PF05534	HicB family	HicB
UHGV-0183834_34	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0183834_34	Structural annotation	PF15919, COG1598, COG4691	NA	NA
UHGV-0183834_36	PHROG	phrog_1233	NA	unknown function
UHGV-0183834_37	UniRef90	UniRef90_A0A5S4VG07	NA	NA
UHGV-0183834_37	Pfam	PF13711	NA	DUF4160
UHGV-0183834_38	eggNOG-mapper	697303.Thewi_1140	NA	NA
UHGV-0183834_39	PHROG	phrog_5902	NA	unknown function
UHGV-0183834_39	UniRef90	UniRef90_UPI000B20B41E	DEAD/DEAH box helicase family protein	NA
UHGV-0183834_39	eggNOG-mapper	1226322.HMPREF1545_03544	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-0183834_39	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0183834_39	Structural annotation	PF03354, MF_04148, NF007827, COG5410	NA	NA
UHGV-0183834_40	PHROG	phrog_5902	NA	unknown function
UHGV-0183834_40	UniRef90	UniRef90_A0A0M2NI11	Putative terminase B protein	NA
UHGV-0183834_40	eggNOG-mapper	1226322.HMPREF1545_03544	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-0183834_40	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0183834_40	Structural annotation	PF20441, MF_04148, TIGR01547, COG4373	NA	NA
UHGV-0183834_41	PHROG	phrog_64	portal protein	head and packaging
UHGV-0183834_41	UniRef90	UniRef90_UPI000C078B3E	phage portal protein	NA
UHGV-0183834_41	eggNOG-mapper	1522092.A0A090DBP3_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0183834_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0183834_41	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0183834_41	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0183834_42	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0183834_42	UniRef90	UniRef90_A0A1M6MYA3	Phage putative head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0183834_42	eggNOG-mapper	1123304.AQYA01000037_gene216	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0183834_42	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0183834_42	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0183834_42	COG	COG2369	NA	NA
UHGV-0183834_42	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0183834_43	eggNOG-mapper	445974.CLORAM_02934	Phage Mu protein F like protein	NA
UHGV-0183834_43	COG	COG2369	NA	NA
UHGV-0183834_44	PHROG	phrog_34144	NA	unknown function
UHGV-0183834_44	UniRef90	UniRef90_R6AQU3	Conserved protein	NA
UHGV-0183834_44	eggNOG-mapper	1064535.MELS_1696	NA	NA
UHGV-0183834_44	Structural annotation	PF20111	NA	NA
UHGV-0183834_45	Structural annotation	PF09871, TIGR00739, COG1862	NA	NA
UHGV-0183834_46	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0183834_46	UniRef90	UniRef90_UPI0015D4C5E5	phage scaffolding protein	NA
UHGV-0183834_46	eggNOG-mapper	935836.JAEL01000021_gene1495	Phage minor structural protein GP20	NA
UHGV-0183834_46	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0183834_46	Structural annotation	PF06810	NA	NA
UHGV-0183834_47	PHROG	phrog_10	major head protein	head and packaging
UHGV-0183834_47	UniRef90	UniRef90_A0A6N7S5V0	Phage major capsid protein	NA
UHGV-0183834_47	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-0183834_47	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0183834_47	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0183834_47	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0183834_47	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0183834_47	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0183834_48	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0183834_48	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0183834_48	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0183834_49	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0183834_50	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0183834_50	UniRef90	UniRef90_A0A4R7KUL9	HK97 gp10 family phage protein	NA
UHGV-0183834_50	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0183834_50	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0183834_50	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0183834_50	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0183834_51	PHROG	phrog_78	tail terminator	connector
UHGV-0183834_51	UniRef90	UniRef90_A0A7W2AJJ9	NA	NA
UHGV-0183834_51	eggNOG-mapper	649747.HMPREF0083_01005	NA	NA
UHGV-0183834_51	Structural annotation	PF05657	NA	NA
UHGV-0183834_52	PHROG	phrog_88	major tail protein	tail
UHGV-0183834_52	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0183834_52	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0183834_54	PHROG	phrog_13160	NA	unknown function
UHGV-0183834_55	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0183834_55	PHROG	phrog_7078	NA	unknown function
UHGV-0183834_55	eggNOG-mapper	1122927.KB895413_gene1615	phage tail tape measure protein	NA
UHGV-0183834_55	COG	COG5283	Phage-related tail protein	NA
UHGV-0183834_57	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0183834_57	UniRef90	UniRef90_W2E6C9	Phage-related protein	NA
UHGV-0183834_57	eggNOG-mapper	491915.Aflv_0674	Phage tail protein	NA
UHGV-0183834_57	COG	COG4722	Phage-related protein YomH	NA
UHGV-0183834_57	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0183834_58	PHROG	phrog_538	minor tail protein	tail
UHGV-0183834_58	UniRef90	UniRef90_UPI0006847BDA	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0183834_58	eggNOG-mapper	491915.Aflv_0677	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0183834_58	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0183834_58	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0183834_59	PHROG	phrog_1220	head protein	head and packaging
UHGV-0183834_59	UniRef90	UniRef90_Q5L2K4	Phage-related protein	NA
UHGV-0183834_59	eggNOG-mapper	1121423.JONT01000035_gene908	COG NOG18825 non supervised orthologous group	NA
UHGV-0183834_61	PHROG	phrog_36886	NA	unknown function
UHGV-0183834_61	eggNOG-mapper	411473.RUMCAL_00421	tail collar domain protein	NA
UHGV-0183834_61	COG	COG4675	Phage tail collar domain	NA
UHGV-0183834_63	Structural annotation	PF16938	NA	NA
UHGV-0183834_64	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0183834_64	PHROG	phrog_35436	amidase	lysis
UHGV-0183834_64	UniRef90	UniRef90_A0A7C6J5S5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0183834_64	eggNOG-mapper	553973.CLOHYLEM_07195	Ami_2	NA
UHGV-0183834_64	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0183834_64	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0183834_64	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA