UHGV-0183891

Genome information

Genome length 38,040 bps

CDS count 62

Completeness 85.35% (medium-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0183891
vOTU ID	vOTU-029103
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596885
BioSample	SAMN09781785
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.11
Jumbo phage	No

Genome content
Genome length	38,040 bps
GC content	48.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	92.84%
Average CDS length	572.71 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0183891_1	PHROG	phrog_20532	NA	unknown function
UHGV-0183891_1	eggNOG-mapper	1280692.AUJL01000012_gene3222	NA	NA
UHGV-0183891_1	Structural annotation	PF00132	NA	NA
UHGV-0183891_4	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0183891_4	UniRef90	UniRef90_A0A1C6CBG4	Siphovirus Gp157	NA
UHGV-0183891_4	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0183891_4	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0183891_4	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0183891_5	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0183891_5	UniRef90	UniRef90_A0A1C6CBK6	ERF superfamily	NA
UHGV-0183891_5	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0183891_5	Pfam	PF04404	ERF superfamily	ERF
UHGV-0183891_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0183891_5	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0183891_6	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0183891_6	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0183891_6	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0183891_7	PHROG	phrog_7566	NA	unknown function
UHGV-0183891_7	UniRef90	UniRef90_UPI001CD6F8EA	phosphoenolpyruvate carboxykinase	NA
UHGV-0183891_7	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0183891_8	PHROG	phrog_2113	NA	unknown function
UHGV-0183891_8	Structural annotation	PF21715, TIGR04176, COG1654	NA	NA
UHGV-0183891_9	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0183891_9	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0183891_9	UniRef90	UniRef90_R5GFL1	Putative prophage Lp2 protein 24	NA
UHGV-0183891_9	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0183891_9	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0183891_9	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0183891_10	PHROG	phrog_15768	NA	unknown function
UHGV-0183891_10	UniRef90	UniRef90_R5GGJ0	NA	NA
UHGV-0183891_10	eggNOG-mapper	1123058.KB894219_gene165	COG NOG19076 non supervised orthologous group	NA
UHGV-0183891_10	AcrCatalog	cluster_14472	NA	NA
UHGV-0183891_10	Pfam	PF19808	NA	DUF6291
UHGV-0183891_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0183891_10	Structural annotation	PF19808	NA	NA
UHGV-0183891_11	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0183891_12	PHROG	phrog_25231	NA	unknown function
UHGV-0183891_12	Structural annotation	PF04936	NA	NA
UHGV-0183891_13	Structural annotation	PF04936	NA	NA
UHGV-0183891_15	PHROG	phrog_15198	NA	unknown function
UHGV-0183891_15	UniRef90	UniRef90_A0A3A6KZJ8	NA	NA
UHGV-0183891_15	eggNOG-mapper	411461.DORFOR_01155	NA	NA
UHGV-0183891_15	Pfam	PF04448	NA	DUF551
UHGV-0183891_15	Structural annotation	NF041588	NA	NA
UHGV-0183891_17	PHROG	phrog_7839	NA	unknown function
UHGV-0183891_17	eggNOG-mapper	1410650.JHWL01000003_gene2844	NA	NA
UHGV-0183891_17	Structural annotation	PF08860	NA	NA
UHGV-0183891_18	PHROG	phrog_8684	NA	unknown function
UHGV-0183891_18	UniRef90	UniRef90_A0A412KF78	YopX domain-containing protein	NA
UHGV-0183891_18	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0183891_18	Pfam	PF09643	YopX protein	YopX
UHGV-0183891_18	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0183891_19	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0183891_20	PHROG	phrog_9300	NA	unknown function
UHGV-0183891_21	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-0183891_21	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0183891_21	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0183891_22	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0183891_22	PHROG	phrog_1	integrase	integration and excision
UHGV-0183891_22	UniRef90	UniRef90_UPI001D14C144	tyrosine-type recombinase/integrase	NA
UHGV-0183891_22	eggNOG-mapper	1298920.KI911353_gene2699	Belongs to the 'phage' integrase family	NA
UHGV-0183891_22	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0183891_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0183891_22	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0183891_22	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0183891_23	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0183891_23	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0183891_23	UniRef90	UniRef90_A0A3R6RTV6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0183891_23	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0183891_23	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0183891_23	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0183891_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0183891_23	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0183891_24	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0183891_26	UniRef90	UniRef90_O21986	Orf74a gp	NA
UHGV-0183891_27	PHROG	phrog_33130	NA	unknown function
UHGV-0183891_27	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0183891_27	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0183891_28	eggNOG-mapper	428125.CLOLEP_01366	NA	NA
UHGV-0183891_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0183891_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0183891_29	UniRef90	UniRef90_A0A412EKJ9	PBSX family phage terminase large subunit	NA
UHGV-0183891_29	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0183891_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0183891_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0183891_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0183891_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0183891_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0183891_29	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0183891_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0183891_31	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0183891_31	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0183891_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0183891_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0183891_32	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-0183891_32	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0183891_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0183891_32	COG	COG2369	NA	NA
UHGV-0183891_32	Structural annotation	PF06152	NA	NA
UHGV-0183891_33	UniRef90	UniRef90_A0A416S3A4	CTP synthase	NA
UHGV-0183891_33	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0183891_35	PHROG	phrog_21718	NA	unknown function
UHGV-0183891_35	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0183891_37	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0183891_39	PHROG	phrog_20016	NA	unknown function
UHGV-0183891_39	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-0183891_39	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0183891_39	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0183891_40	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0183891_42	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0183891_43	PHROG	phrog_247	major head protein	head and packaging
UHGV-0183891_43	UniRef90	UniRef90_A0A3R6K7E9	Phage coat protein	NA
UHGV-0183891_43	eggNOG-mapper	1292035.H476_1014	NA	NA
UHGV-0183891_43	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0183891_43	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0183891_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0183891_44	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0183891_46	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0183891_46	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0183891_46	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0183891_46	Pfam	PF14359	NA	DUF4406
UHGV-0183891_46	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0183891_47	PHROG	phrog_18218	NA	unknown function
UHGV-0183891_47	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0183891_47	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0183891_48	PHROG	phrog_8680	NA	unknown function
UHGV-0183891_48	UniRef90	UniRef90_UPI001C0F342A	NA	NA
UHGV-0183891_48	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0183891_48	Pfam	PF14386	NA	DUF4417
UHGV-0183891_48	Structural annotation	PF14386	NA	NA
UHGV-0183891_50	PHROG	phrog_3366	NA	unknown function
UHGV-0183891_50	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0183891_50	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0183891_51	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0183891_51	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0183891_51	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0183891_51	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0183891_51	Structural annotation	PF11114	NA	NA
UHGV-0183891_52	PHROG	phrog_3266	tail completion	connector
UHGV-0183891_52	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0183891_52	Structural annotation	PF12691	NA	NA
UHGV-0183891_53	PHROG	phrog_3099	NA	unknown function
UHGV-0183891_53	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0183891_53	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0183891_54	PHROG	phrog_11299	NA	unknown function
UHGV-0183891_54	eggNOG-mapper	476272.RUMHYD_01783	NA	NA
UHGV-0183891_54	Structural annotation	PF10666	NA	NA
UHGV-0183891_55	PHROG	phrog_706	NA	unknown function
UHGV-0183891_55	UniRef90	UniRef90_A0A1C6CG51	Bacteriophage Gp15 protein	NA
UHGV-0183891_55	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0183891_55	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0183891_55	Structural annotation	PF06854	NA	NA
UHGV-0183891_56	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0183891_56	UniRef90	UniRef90_A0A1C6CG40	Phage-related protein	NA
UHGV-0183891_56	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0183891_56	COG	COG5412	Phage-related protein	NA
UHGV-0183891_57	PHROG	phrog_1194	NA	unknown function
UHGV-0183891_57	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0183891_57	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0183891_58	PHROG	phrog_32744	NA	unknown function
UHGV-0183891_58	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0183891_58	Structural annotation	PF14594, PF21114, MF_00813, NF033848, TIGR02961, COG4379, COG4266	NA	NA
UHGV-0183891_59	PHROG	phrog_18725	NA	unknown function
UHGV-0183891_59	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-0183891_60	eggNOG-mapper	411902.CLOBOL_00122	NA	NA