UHGV-0183996

Genome information

Genome length 43,187 bps

CDS count 64

Completeness 100.00% (complete)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0183996
vOTU ID	vOTU-046824
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598809
BioSample	SAMN10407346
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.61
Jumbo phage	No

Genome content
Genome length	43,187 bps
GC content	54.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	93.98%
Average CDS length	636.84 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0183996_1	PHROG	phrog_13908	NA	unknown function
UHGV-0183996_1	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0183996_2	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0183996_2	UniRef90	UniRef90_A0A2V2GQW4	N4-gp56 family major capsid protein	NA
UHGV-0183996_2	eggNOG-mapper	748224.HMPREF9436_02545	NA	NA
UHGV-0183996_2	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0183996_2	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0183996_3	PHROG	phrog_15239	NA	unknown function
UHGV-0183996_4	PHROG	phrog_12105	NA	unknown function
UHGV-0183996_4	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0183996_5	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0183996_5	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-0183996_5	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0183996_8	PHROG	phrog_15594	NA	unknown function
UHGV-0183996_8	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0183996_10	PHROG	phrog_24103	NA	unknown function
UHGV-0183996_10	eggNOG-mapper	1118055.CAGU01000013_gene761	NA	NA
UHGV-0183996_11	PHROG	phrog_38190	NA	unknown function
UHGV-0183996_11	eggNOG-mapper	665956.HMPREF1032_02936	NA	NA
UHGV-0183996_12	Structural annotation	PF03425, NF038128, COG5156	NA	NA
UHGV-0183996_14	PHROG	phrog_2310	NA	unknown function
UHGV-0183996_14	eggNOG-mapper	1151292.QEW_0364	NA	NA
UHGV-0183996_15	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-0183996_15	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0183996_16	PHROG	phrog_22978	NA	unknown function
UHGV-0183996_16	eggNOG-mapper	1123296.JQKE01000020_gene1014	extracellular polysaccharide biosynthetic process	NA
UHGV-0183996_16	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0183996_16	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0183996_16	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0183996_17	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0183996_17	PHROG	phrog_2649	endolysin	lysis
UHGV-0183996_17	UniRef90	UniRef90_UPI001C12323B	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0183996_17	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0183996_17	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0183996_17	COG	COG2951	Membrane-bound lytic murein transglycosylase B	NA
UHGV-0183996_17	Structural annotation	PF08291, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0183996_18	PHROG	phrog_4105	NA	unknown function
UHGV-0183996_18	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0183996_18	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0183996_19	PHROG	phrog_1129	holin	lysis
UHGV-0183996_19	UniRef90	UniRef90_A0A316A1J8	Holin family Hol44 protein (Superfamily V)	NA
UHGV-0183996_19	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0183996_19	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0183996_19	Structural annotation	PF06946	NA	NA
UHGV-0183996_20	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-0183996_21	PHROG	phrog_3754	NA	unknown function
UHGV-0183996_21	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0183996_22	PHROG	phrog_21718	NA	unknown function
UHGV-0183996_22	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0183996_23	PHROG	phrog_22984	NA	unknown function
UHGV-0183996_24	PHROG	phrog_16490	NA	unknown function
UHGV-0183996_24	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0183996_25	PHROG	phrog_20016	NA	unknown function
UHGV-0183996_25	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0183996_25	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0183996_25	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0183996_26	Structural annotation	PF12510	NA	NA
UHGV-0183996_27	KOfam	K14059	int; integrase	NA
UHGV-0183996_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0183996_27	UniRef90	UniRef90_A0A3D3Y0G6	Integrase	NA
UHGV-0183996_27	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0183996_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0183996_27	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0183996_27	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0183996_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183996_28	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0183996_30	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0183996_30	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0183996_30	UniRef90	UniRef90_A0A3D3T8Y1	XRE family transcriptional regulator	NA
UHGV-0183996_30	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0183996_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0183996_30	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0183996_31	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0183996_31	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0183996_38	PHROG	phrog_3657	NA	unknown function
UHGV-0183996_38	eggNOG-mapper	1121864.OMO_02139	NA	NA
UHGV-0183996_39	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0183996_39	UniRef90	UniRef90_A0A1Y3RPZ6	NA	NA
UHGV-0183996_39	eggNOG-mapper	1384057.CD33_13985	NA	NA
UHGV-0183996_39	Pfam	PF12684	NA	DUF3799
UHGV-0183996_39	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0183996_39	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0183996_40	Structural annotation	PF19561	NA	NA
UHGV-0183996_41	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0183996_41	UniRef90	UniRef90_A0A3R6WN18	NA	NA
UHGV-0183996_41	eggNOG-mapper	106648.BBLJ01000054_gene3803	NA	NA
UHGV-0183996_41	Pfam	PF06356	NA	DUF1064
UHGV-0183996_41	Structural annotation	PF06356	NA	NA
UHGV-0183996_42	PHROG	phrog_16304	NA	unknown function
UHGV-0183996_42	UniRef90	UniRef90_UPI0011C97B10	NA	NA
UHGV-0183996_42	eggNOG-mapper	629265.PMA4326_09935	NA	NA
UHGV-0183996_42	Pfam	PF19808	NA	DUF6291
UHGV-0183996_42	COG	COG3756	NA	NA
UHGV-0183996_42	Structural annotation	PF19808	NA	NA
UHGV-0183996_45	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0183996_45	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0183996_46	eggNOG-mapper	1437882.AZRU01000211_gene2728	NA	NA
UHGV-0183996_47	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0183996_48	PHROG	phrog_3136	NA	unknown function
UHGV-0183996_48	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0183996_48	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0183996_48	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0183996_49	eggNOG-mapper	742817.HMPREF9449_01796	radical SAM domain protein	NA
UHGV-0183996_49	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0183996_50	PHROG	phrog_13321	NA	unknown function
UHGV-0183996_50	UniRef90	UniRef90_UPI00030D2C45	radical SAM protein	NA
UHGV-0183996_50	eggNOG-mapper	1235797.C816_03559	PFAM Radical SAM	NA
UHGV-0183996_50	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0183996_50	COG	COG1533	DNA repair photolyase	NA
UHGV-0183996_50	Structural annotation	PF20903, MF_00917, NF033668, COG4422	NA	NA
UHGV-0183996_51	PHROG	phrog_3136	NA	unknown function
UHGV-0183996_51	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0183996_51	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0183996_51	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0183996_51	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0183996_56	PHROG	phrog_24490	NA	unknown function
UHGV-0183996_56	eggNOG-mapper	1232428.CAVO010000067_gene435	NA	NA
UHGV-0183996_59	UniRef90	UniRef90_A0A847E3M6	Ribbon-helix-helix protein, CopG family	NA
UHGV-0183996_59	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-0183996_59	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0183996_62	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0183996_62	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0183996_62	UniRef90	UniRef90_A0A3D5TIM8	Terminase-like family protein	NA
UHGV-0183996_62	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0183996_62	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0183996_62	COG	COG1783	Phage terminase large subunit	NA
UHGV-0183996_62	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0183996_63	PHROG	phrog_156	portal protein	head and packaging
UHGV-0183996_63	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0183996_63	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0183996_64	KOfam	K07584	NA	NA
UHGV-0183996_64	PHROG	phrog_4478	peptidase	other
UHGV-0183996_64	eggNOG-mapper	1231377.C426_1790	Pfam:Peptidase_C108	NA
UHGV-0183996_64	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0183996_64	COG	COG2868	NA	NA
UHGV-0183996_64	Structural annotation	PF04327, NF011133, COG2868	NA	NA