UHGV-0184067

Genome information

Genome length 34,646 bps

CDS count 39

Completeness 56.58% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0184067
vOTU ID	vOTU-029423
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595614
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.04
Jumbo phage	No

Genome content
Genome length	34,646 bps
GC content	33.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	93.98%
Average CDS length	835.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0184067_4	KOfam	K04068	nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]	NA
UHGV-0184067_4	PHROG	phrog_626	anaerobic ribonucleotide reductase small subunit	DNA, RNA and nucleotide metabolism
UHGV-0184067_4	UniRef90	UniRef90_A0A645D7A4	Anaerobic ribonucleoside-triphosphate reductase-activating protein	NA
UHGV-0184067_4	eggNOG-mapper	1414720.CBYM010000058_gene26	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine	NA
UHGV-0184067_4	Pfam	PF13353	4Fe-4S single cluster domain	Fer4_12
UHGV-0184067_4	NCBIFam	TIGR02491.1	anaerobic ribonucleoside-triphosphate reductase activating protein	NA
UHGV-0184067_4	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-0184067_4	Structural annotation	PF13353, MF_00917, TIGR02491, COG0602	NA	NA
UHGV-0184067_5	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-0184067_5	PHROG	phrog_487	NrdD-like anaerobic ribonucleotide reductase large subunit	moron, auxiliary metabolic gene and host takeover
UHGV-0184067_5	UniRef90	UniRef90_R6YAY9	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0184067_5	eggNOG-mapper	1232446.BAIE02000055_gene3075	Ribonucleoside-triphosphate reductase	NA
UHGV-0184067_5	Pfam	PF03477	ATP cone domain	ATP-cone
UHGV-0184067_5	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0184067_5	NCBIFam	NF006732.0	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0184067_5	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0184067_5	Structural annotation	PF13597, PF03477, MF_00440, NF006732, COG1328	NA	NA
UHGV-0184067_6	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0184067_6	eggNOG-mapper	1147137.I1TJZ8_9CAUD	ligase activity	NA
UHGV-0184067_7	KOfam	K01491	folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]	NA
UHGV-0184067_7	PHROG	phrog_7320	tetrahydrofolate dehydrogenase and cyclohydrolase	other
UHGV-0184067_7	UniRef90	UniRef90_A0A352MV64	Bifunctional protein FolD	NA
UHGV-0184067_7	eggNOG-mapper	1002809.SSIL_1698	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	NA
UHGV-0184067_7	Pfam	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain	THF_DHG_CYH
UHGV-0184067_7	Pfam	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
UHGV-0184067_7	COG	COG0190	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	NA
UHGV-0184067_7	Structural annotation	PF02882, PF00763, MF_01576, NF010775, COG0190	NA	NA
UHGV-0184067_8	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0184067_8	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0184067_8	UniRef90	UniRef90_UPI00189D1071	dUTP pyrophosphatase	NA
UHGV-0184067_8	eggNOG-mapper	642492.Clole_2019	dUTPase	NA
UHGV-0184067_8	Pfam	PF00692	dUTPase	dUTPase
UHGV-0184067_8	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0184067_8	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0184067_9	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0184067_9	UniRef90	UniRef90_A0A7X4ZP73	Helicase C-terminal domain-containing protein	NA
UHGV-0184067_9	eggNOG-mapper	665956.HMPREF1032_00650	Helicase conserved C-terminal domain	NA
UHGV-0184067_9	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0184067_9	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-0184067_10	PHROG	phrog_24386	NA	unknown function
UHGV-0184067_10	eggNOG-mapper	742740.HMPREF9474_02291	phosphatase activity	NA
UHGV-0184067_10	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-0184067_12	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0184067_12	eggNOG-mapper	411460.RUMTOR_01384	NA	NA
UHGV-0184067_12	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0184067_14	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0184067_14	UniRef90	UniRef90_UPI00164B6B51	NA	NA
UHGV-0184067_14	eggNOG-mapper	742740.HMPREF9474_02303	NA	NA
UHGV-0184067_14	Pfam	PF19263	NA	DUF5906
UHGV-0184067_14	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0184067_14	Structural annotation	PF00136, PF05272, PF10991, PF09250, MF_04100, MF_00016, NF011296, TIGR00592, COG3378, COG0417	NA	NA
UHGV-0184067_16	PHROG	phrog_4678	NA	unknown function
UHGV-0184067_16	eggNOG-mapper	742740.HMPREF9474_02306	NA	NA
UHGV-0184067_17	PHROG	phrog_4695	NA	unknown function
UHGV-0184067_17	eggNOG-mapper	742733.HMPREF9469_05070	NA	NA
UHGV-0184067_18	PHROG	phrog_2152	NA	unknown function
UHGV-0184067_18	UniRef90	UniRef90_D4P7I0	Gp069	NA
UHGV-0184067_18	eggNOG-mapper	691965.D4P7I0_9CAUD	NA	NA
UHGV-0184067_18	Pfam	PF19880	NA	DUF6353
UHGV-0184067_18	Structural annotation	PF19880	NA	NA
UHGV-0184067_19	PHROG	phrog_236	nucleotide kinase	other
UHGV-0184067_19	UniRef90	UniRef90_A0A4D6DT77	NA	NA
UHGV-0184067_19	eggNOG-mapper	742740.HMPREF9474_02311	NA	NA
UHGV-0184067_19	Pfam	PF11753	NA	DUF3310
UHGV-0184067_19	Structural annotation	PF18300, MF_01549, NF003076	NA	NA
UHGV-0184067_20	PHROG	phrog_4079	NA	unknown function
UHGV-0184067_20	eggNOG-mapper	742733.HMPREF9469_05076	NA	NA
UHGV-0184067_22	PHROG	phrog_2152	NA	unknown function
UHGV-0184067_22	UniRef90	UniRef90_UPI001D065195	NA	NA
UHGV-0184067_22	eggNOG-mapper	665956.HMPREF1032_00634	NA	NA
UHGV-0184067_22	Pfam	PF19880	NA	DUF6353
UHGV-0184067_22	Structural annotation	PF19880	NA	NA
UHGV-0184067_24	PHROG	phrog_19711	NA	unknown function
UHGV-0184067_27	PHROG	phrog_15866	NA	unknown function
UHGV-0184067_27	eggNOG-mapper	742740.HMPREF9474_02324	NA	NA
UHGV-0184067_28	eggNOG-mapper	349123.Lreu23DRAFT_3172	NA	NA
UHGV-0184067_29	UniRef90	UniRef90_A0A1C6JBW5	Small integral membrane protein	NA
UHGV-0184067_29	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0184067_30	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0184067_30	PHROG	phrog_435	endolysin	lysis
UHGV-0184067_30	UniRef90	UniRef90_A0A1T4X7E7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0184067_30	eggNOG-mapper	767817.Desgi_4433	N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family	NA
UHGV-0184067_30	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0184067_30	Pfam	PF05036	SPOR domain	SPOR
UHGV-0184067_30	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0184067_30	Structural annotation	PF01520, PF18342, MF_00562, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0184067_33	PHROG	phrog_21231	virion structural protein	head and packaging
UHGV-0184067_33	eggNOG-mapper	1499683.CCFF01000005_gene81	NA	NA
UHGV-0184067_33	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0184067_33	Pfam	PF13229	Right handed beta helix region	Beta_helix
UHGV-0184067_33	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0184067_34	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0184067_34	UniRef90	UniRef90_UPI0018AACC41	phage tail protein	NA
UHGV-0184067_34	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0184067_34	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0184067_34	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0184067_34	COG	COG4926	Phage-related protein	NA
UHGV-0184067_34	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0184067_35	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0184067_35	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0184067_35	eggNOG-mapper	1582149.A0A0A8WHP7_9CAUD	Phage tail protein	NA
UHGV-0184067_35	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0184067_36	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0184067_36	UniRef90	UniRef90_A0A173Z2Q0	Phage-related protein	NA
UHGV-0184067_36	eggNOG-mapper	742733.HMPREF9469_05020	phage tail tape measure protein	NA
UHGV-0184067_36	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0184067_36	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0184067_36	COG	COG5412	Phage-related protein	NA
UHGV-0184067_36	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0184067_37	UniRef90	UniRef90_A0A373NV95	HK97 gp10 family phage protein	NA
UHGV-0184067_37	eggNOG-mapper	742740.HMPREF9474_02263	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0184067_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0184067_37	Structural annotation	TIGR01725	NA	NA
UHGV-0184067_38	PHROG	phrog_4338	NA	unknown function
UHGV-0184067_38	eggNOG-mapper	1537917.JU82_06570	NA	NA
UHGV-0184067_39	PHROG	phrog_4282	NA	unknown function
UHGV-0184067_39	eggNOG-mapper	478749.BRYFOR_08517	NA	NA