UHGV-0184117

Genome information

Genome length 29,979 bps

CDS count 41

Completeness 93.22% (high-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0184117
vOTU ID	vOTU-072786
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2737790_b1_ct27_vs3@Myoviridae__sp._ctbU327@linear
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.69
Jumbo phage	No

Genome content
Genome length	29,979 bps
GC content	51.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	92.59%
Average CDS length	681.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0184117_1	KOfam	K09607	ina; immune inhibitor A [EC:3.4.24.-]	NA
UHGV-0184117_1	UniRef90	UniRef90_B0MGC7	M6 family metalloprotease domain protein	NA
UHGV-0184117_1	eggNOG-mapper	1211844.CBLM010000095_gene49	M6 family metalloprotease domain protein	NA
UHGV-0184117_1	Pfam	PF05547	Immune inhibitor A peptidase M6, catalytic domain	Peptidase_M6
UHGV-0184117_1	COG	COG0683	ABC-type branched-chain amino acid transport system, periplasmic component	NA
UHGV-0184117_2	KOfam	K14059	int; integrase	NA
UHGV-0184117_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0184117_2	UniRef90	UniRef90_A0A316RE68	Tyr recombinase domain-containing protein	NA
UHGV-0184117_2	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-0184117_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0184117_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0184117_2	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0184117_3	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0184117_3	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0184117_3	UniRef90	UniRef90_A0A316R7F3	Exonuclease domain-containing protein	NA
UHGV-0184117_3	eggNOG-mapper	545694.TREPR_3623	EXOIII	NA
UHGV-0184117_3	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0184117_3	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0184117_3	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0184117_3	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0184117_4	PHROG	phrog_16443	NA	unknown function
UHGV-0184117_4	eggNOG-mapper	1118057.CAGX01000058_gene115	NA	NA
UHGV-0184117_5	PHROG	phrog_87	metallo-protease	other
UHGV-0184117_5	UniRef90	UniRef90_A0A316RCR6	Peptidase_M78 domain-containing protein	NA
UHGV-0184117_5	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-0184117_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0184117_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0184117_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0184117_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0184117_6	UniRef90	UniRef90_A0A1Q6LC39	HTH cro/C1-type domain-containing protein	NA
UHGV-0184117_6	eggNOG-mapper	1507.HMPREF0262_00424	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0184117_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0184117_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0184117_6	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0184117_7	UniRef90	UniRef90_A0A316R8G0	HTH cro/C1-type domain-containing protein	NA
UHGV-0184117_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0184117_7	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0184117_8	PHROG	phrog_668	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0184117_9	PHROG	phrog_33952	NA	unknown function
UHGV-0184117_11	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0184117_11	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0184117_11	Structural annotation	PF21578	NA	NA
UHGV-0184117_12	PHROG	phrog_34937	NA	unknown function
UHGV-0184117_13	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0184117_13	UniRef90	UniRef90_R6ISF1	NA	NA
UHGV-0184117_13	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-0184117_13	Pfam	PF06356	NA	DUF1064
UHGV-0184117_13	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0184117_16	PHROG	phrog_35860	NA	unknown function
UHGV-0184117_16	UniRef90	UniRef90_UPI001B3C69A2	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0184117_16	eggNOG-mapper	457412.RSAG_01173	PcfK-like protein	NA
UHGV-0184117_16	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0184117_16	Structural annotation	PF14058	NA	NA
UHGV-0184117_17	PHROG	phrog_8470	NA	unknown function
UHGV-0184117_17	UniRef90	UniRef90_UPI001C0AE9DA	PcfJ domain-containing protein	NA
UHGV-0184117_17	eggNOG-mapper	1117108.PAALTS15_13637	PcfJ-like protein	NA
UHGV-0184117_17	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0184117_17	Structural annotation	PF14284	NA	NA
UHGV-0184117_18	PHROG	phrog_15609	NA	unknown function
UHGV-0184117_18	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0184117_18	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0184117_22	PHROG	phrog_1558	NA	unknown function
UHGV-0184117_22	UniRef90	UniRef90_A0A316RAK3	Sigma70_r4_2 domain-containing protein	NA
UHGV-0184117_22	eggNOG-mapper	411459.RUMOBE_01740	NA	NA
UHGV-0184117_22	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0184117_22	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-0184117_23	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0184117_23	UniRef90	UniRef90_A0A844FGQ3	HNH endonuclease	NA
UHGV-0184117_23	eggNOG-mapper	411459.RUMOBE_01739	NA	NA
UHGV-0184117_24	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0184117_24	UniRef90	UniRef90_A0A316RD76	Phage terminase small subunit P27 family	NA
UHGV-0184117_24	eggNOG-mapper	411468.CLOSCI_01487	Phage terminase, small subunit	NA
UHGV-0184117_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0184117_24	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0184117_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0184117_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0184117_25	UniRef90	UniRef90_A0A316R7M0	Terminase large subunit	NA
UHGV-0184117_25	eggNOG-mapper	411459.RUMOBE_01737	NA	NA
UHGV-0184117_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0184117_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0184117_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0184117_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0184117_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0184117_26	UniRef90	UniRef90_A0A316R7D3	Phage portal protein	NA
UHGV-0184117_26	eggNOG-mapper	411459.RUMOBE_01735	NA	NA
UHGV-0184117_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0184117_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0184117_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0184117_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0184117_27	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0184117_27	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0184117_27	UniRef90	UniRef90_A0A316R8I3	Clp protease	NA
UHGV-0184117_27	eggNOG-mapper	742741.HMPREF9475_00424	Clp protease	NA
UHGV-0184117_27	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0184117_27	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0184117_27	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0184117_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0184117_28	UniRef90	UniRef90_A0A316RM35	Phage major capsid protein	NA
UHGV-0184117_28	eggNOG-mapper	411459.RUMOBE_01733	phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0184117_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0184117_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0184117_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0184117_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0184117_29	UniRef90	UniRef90_A0A316R9F5	Phage gp6-like head-tail connector protein	NA
UHGV-0184117_29	eggNOG-mapper	411459.RUMOBE_01732	NA	NA
UHGV-0184117_29	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0184117_29	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0184117_29	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0184117_30	UniRef90	UniRef90_A0A316R8D9	Phage head-tail adapter protein	NA
UHGV-0184117_30	eggNOG-mapper	195103.CPF_1582	Phage head-tail adaptor	NA
UHGV-0184117_30	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0184117_30	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0184117_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0184117_31	UniRef90	UniRef90_A0A174MCG9	Phage protein, HK97 gp10 family	NA
UHGV-0184117_31	eggNOG-mapper	411459.RUMOBE_01730	Phage protein, HK97 gp10 family	NA
UHGV-0184117_31	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0184117_31	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0184117_32	PHROG	phrog_78	tail terminator	connector
UHGV-0184117_32	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-0184117_32	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0184117_33	PHROG	phrog_88	major tail protein	tail
UHGV-0184117_33	UniRef90	UniRef90_A0A316RAJ2	Major tail protein	NA
UHGV-0184117_33	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-0184117_33	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0184117_33	COG	COG5492	NA	NA
UHGV-0184117_33	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0184117_34	PHROG	phrog_13494	NA	unknown function
UHGV-0184117_34	eggNOG-mapper	742741.HMPREF9475_00431	NA	NA
UHGV-0184117_35	PHROG	phrog_25901	NA	unknown function
UHGV-0184117_35	eggNOG-mapper	411468.CLOSCI_01498	NA	NA
UHGV-0184117_36	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0184117_36	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0184117_36	UniRef90	UniRef90_A0A316R7C3	Phage tail tape measure protein	NA
UHGV-0184117_36	eggNOG-mapper	35241.Q9AYV8_BPTU2	peptidoglycan catabolic process	NA
UHGV-0184117_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0184117_36	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0184117_37	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0184117_37	UniRef90	UniRef90_UPI0019689066	phage tail protein	NA
UHGV-0184117_37	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0184117_37	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0184117_37	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0184117_37	COG	COG4722	Phage-related protein YomH	NA
UHGV-0184117_37	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0184117_38	PHROG	phrog_13289	tail protein	tail
UHGV-0184117_38	UniRef90	UniRef90_A0A316RM27	Prophage_tail domain-containing protein	NA
UHGV-0184117_38	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0184117_38	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0184117_38	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0184117_38	COG	COG4926	Phage-related protein	NA
UHGV-0184117_39	UniRef90	UniRef90_A0A316R9D9	BppU_N domain-containing protein	NA
UHGV-0184117_39	eggNOG-mapper	641107.CDLVIII_4353	NA	NA
UHGV-0184117_39	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0184117_39	Structural annotation	PF00386, NF033147	NA	NA
UHGV-0184117_40	UniRef90	UniRef90_R6J123	ATP synthase B chain	NA