UHGV-0184189

Genome information

Genome length 31,954 bps

CDS count 36

Completeness 99.90% (high-quality)

geNomad score 0.9662

Prediction confidence Confident

Genome information
Genome ID	UHGV-0184189
vOTU ID	vOTU-011119
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2737668_a1_ct131957_vs1@Siphoviridae__sp._ctrp31
BioSample	SAMEA2737668
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	Provirus
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9662
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.54
Jumbo phage	No

Genome content
Genome length	31,954 bps
GC content	42.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	87.93%
Average CDS length	783.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0184189_2	PHROG	phrog_25531	NA	unknown function
UHGV-0184189_2	eggNOG-mapper	1094508.Tsac_1081	Phage plasmid primase P4 family	NA
UHGV-0184189_2	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0184189_8	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0184189_8	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0184189_8	UniRef90	UniRef90_A0A848EQG2	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0184189_8	eggNOG-mapper	1064535.MELS_0974	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0184189_8	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-0184189_8	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0184189_8	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0184189_8	COG	COG0338	DNA-adenine methylase	NA
UHGV-0184189_8	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA
UHGV-0184189_9	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0184189_9	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0184189_9	UniRef90	UniRef90_A0A848ERV0	HNH endonuclease	NA
UHGV-0184189_9	eggNOG-mapper	1089548.KI783301_gene3222	HNH endonuclease	NA
UHGV-0184189_9	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0184189_9	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0184189_10	PHROG	phrog_1066	NA	unknown function
UHGV-0184189_10	eggNOG-mapper	411470.RUMGNA_02061	NA	NA
UHGV-0184189_10	AcrCatalog	cluster_154855	NA	NA
UHGV-0184189_10	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0184189_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0184189_11	UniRef90	UniRef90_A0A848EQX6	Terminase large subunit	NA
UHGV-0184189_11	eggNOG-mapper	1382358.JHVN01000024_gene1704	Phage Terminase	NA
UHGV-0184189_11	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0184189_11	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0184189_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0184189_11	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0184189_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-0184189_12	UniRef90	UniRef90_A0A848EQE1	Phage portal protein	NA
UHGV-0184189_12	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-0184189_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0184189_12	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0184189_12	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0184189_12	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0184189_13	KOfam	K06904	NA	NA
UHGV-0184189_13	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0184189_13	UniRef90	UniRef90_A0A848ERV3	HK97 family phage prohead protease	NA
UHGV-0184189_13	eggNOG-mapper	1235755.ANAM01000006_gene2374	Caudovirus prohead serine protease	NA
UHGV-0184189_13	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0184189_13	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0184189_13	COG	COG3740	Phage head maturation protease	NA
UHGV-0184189_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0184189_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0184189_14	UniRef90	UniRef90_A0A848ES26	Phage major capsid protein	NA
UHGV-0184189_14	eggNOG-mapper	1033738.CAEP01000018_gene3672	Phage capsid family	NA
UHGV-0184189_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0184189_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0184189_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0184189_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0184189_15	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0184189_15	UniRef90	UniRef90_A0A848EQ88	Phage gp6-like head-tail connector protein	NA
UHGV-0184189_15	eggNOG-mapper	66692.ABC1335	Phage gp6-like head-tail connector protein	NA
UHGV-0184189_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0184189_15	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0184189_15	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0184189_16	PHROG	phrog_25	head closure Hc1	connector
UHGV-0184189_16	UniRef90	UniRef90_A0A848ERV5	Phage head closure protein	NA
UHGV-0184189_16	eggNOG-mapper	568816.Acin_1341	Phage head-tail joining protein	NA
UHGV-0184189_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0184189_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0184189_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0184189_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0184189_17	UniRef90	UniRef90_A0A848ENR2	HK97 gp10 family phage protein	NA
UHGV-0184189_17	eggNOG-mapper	1211817.CCAT010000008_gene945	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0184189_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0184189_17	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0184189_18	PHROG	phrog_525	NA	unknown function
UHGV-0184189_18	Pfam	PF20765	NA	DUF6838
UHGV-0184189_19	PHROG	phrog_1480	tail sheath	tail
UHGV-0184189_19	UniRef90	UniRef90_A0A848EQH3	Phage tail sheath protein	NA
UHGV-0184189_19	eggNOG-mapper	568816.Acin_1338	Phage tail sheath C-terminal domain	NA
UHGV-0184189_19	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0184189_19	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0184189_19	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0184189_20	PHROG	phrog_365	tail protein	tail
UHGV-0184189_20	UniRef90	UniRef90_A0A848ERV9	Phage tail tube protein	NA
UHGV-0184189_20	eggNOG-mapper	568816.Acin_1337	Phage tail tube protein	NA
UHGV-0184189_20	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0184189_20	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0184189_21	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0184189_21	UniRef90	UniRef90_I0GWR7	Phage related protein	NA
UHGV-0184189_21	eggNOG-mapper	568816.Acin_1336	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0184189_21	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0184189_21	Structural annotation	PF08890	NA	NA
UHGV-0184189_22	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0184189_22	UniRef90	UniRef90_A0A848EQY5	Phage tail tape measure protein	NA
UHGV-0184189_22	eggNOG-mapper	1120985.AUMI01000018_gene2905	Phage-related minor tail protein	NA
UHGV-0184189_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0184189_22	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0184189_22	COG	COG5283	Phage-related tail protein	NA
UHGV-0184189_22	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0184189_23	PHROG	phrog_5184	NA	unknown function
UHGV-0184189_23	UniRef90	UniRef90_I0GWS0	Phage related protein	NA
UHGV-0184189_23	eggNOG-mapper	568816.Acin_1963	LysM domain	NA
UHGV-0184189_23	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0184189_23	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0184189_24	PHROG	phrog_400	tail protein	tail
UHGV-0184189_24	UniRef90	UniRef90_A0A848ERW5	Phage_lysozyme2 domain-containing protein	NA
UHGV-0184189_24	eggNOG-mapper	568816.Acin_1962	NLP P60 protein	NA
UHGV-0184189_24	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0184189_24	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0184189_25	PHROG	phrog_579	NA	unknown function
UHGV-0184189_25	UniRef90	UniRef90_A0A848ES36	NA	NA
UHGV-0184189_25	eggNOG-mapper	1123250.KB908414_gene2116	NA	NA
UHGV-0184189_25	Pfam	PF10844	NA	DUF2577
UHGV-0184189_25	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0184189_26	PHROG	phrog_120	baseplate protein	tail
UHGV-0184189_26	UniRef90	UniRef90_A0A848EQ98	NA	NA
UHGV-0184189_26	eggNOG-mapper	568816.Acin_1329	NA	NA
UHGV-0184189_26	Pfam	PF10934	NA	DUF2634
UHGV-0184189_26	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0184189_27	PHROG	phrog_6	baseplate protein	tail
UHGV-0184189_27	UniRef90	UniRef90_A0A848ERW6	Baseplate J/gp47 family protein	NA
UHGV-0184189_27	eggNOG-mapper	568816.Acin_1959	Baseplate J-like protein	NA
UHGV-0184189_27	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0184189_27	COG	COG3299	NA	NA
UHGV-0184189_27	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0184189_28	PHROG	phrog_521	tail protein	tail
UHGV-0184189_28	UniRef90	UniRef90_A0A848ENS2	NA	NA
UHGV-0184189_28	eggNOG-mapper	568816.Acin_1327	NA	NA
UHGV-0184189_28	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0184189_28	COG	COG3778	NA	NA
UHGV-0184189_29	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0184189_29	eggNOG-mapper	1401067.HMPREF0872_03390	tail collar domain protein	NA
UHGV-0184189_29	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0184189_30	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0184189_30	UniRef90	UniRef90_UPI0012BB98C9	phage tail protein	NA
UHGV-0184189_30	eggNOG-mapper	1401067.HMPREF0872_00205	tail collar domain protein	NA
UHGV-0184189_30	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0184189_30	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0184189_30	Structural annotation	PF12571, COG5301	NA	NA
UHGV-0184189_31	PHROG	phrog_18996	NA	unknown function
UHGV-0184189_31	eggNOG-mapper	864563.HMPREF9166_0106	NA	NA
UHGV-0184189_34	PHROG	phrog_5867	endolysin	lysis
UHGV-0184189_34	UniRef90	UniRef90_A0A848EQG4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0184189_34	eggNOG-mapper	500635.MITSMUL_03167	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0184189_34	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0184189_34	Structural annotation	MF_04111	NA	NA
UHGV-0184189_36	KOfam	K14059	int; integrase	NA
UHGV-0184189_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0184189_36	UniRef90	UniRef90_A0A848ES46	Site-specific integrase	NA
UHGV-0184189_36	eggNOG-mapper	1443125.Z962_07515	Belongs to the 'phage' integrase family	NA
UHGV-0184189_36	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0184189_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0184189_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0184189_36	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA