UHGV-0184254

Genome information

Genome length 32,800 bps

CDS count 53

Completeness 81.34% (medium-quality)

geNomad score 0.9685

Prediction confidence Confident

Genome information
Genome ID	UHGV-0184254
vOTU ID	vOTU-029435
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2580257_a1_ct49128_vs1@Siphoviridae__sp._ct9Uu1
BioSample	SAMEA2580257
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9685
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.05
Jumbo phage	No

Genome content
Genome length	32,800 bps
GC content	37.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	89.51%
Average CDS length	559.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0184254_1	KOfam	K02557	motB; chemotaxis protein MotB	NA
UHGV-0184254_1	PHROG	phrog_7897	NA	unknown function
UHGV-0184254_1	UniRef90	UniRef90_A0A3A5REY0	OmpA-like domain-containing protein	NA
UHGV-0184254_1	eggNOG-mapper	411476.BACOVA_02495	COG COG1360 Flagellar motor protein	NA
UHGV-0184254_1	PADLOC	ZorB3_00001	MotB	Zorya
UHGV-0184254_1	Pfam	PF00691	OmpA family	OmpA
UHGV-0184254_1	COG	COG1360	Flagellar motor protein MotB	NA
UHGV-0184254_2	UniRef90	UniRef90_A0A1Y4Q2I4	Arm-DNA-bind_5 domain-containing protein	NA
UHGV-0184254_2	Structural annotation	PF17145, TIGR03352	NA	NA
UHGV-0184254_6	UniRef90	UniRef90_A0A5D8YP02	Heavy metal-binding domain-containing protein	NA
UHGV-0184254_6	Structural annotation	PF11524, MF_00976, TIGR03884, COG0393	NA	NA
UHGV-0184254_8	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0184254_8	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0184254_8	UniRef90	UniRef90_UPI0004B6F10F	XRE family transcriptional regulator	NA
UHGV-0184254_8	eggNOG-mapper	1347393.HG726022_gene3710	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0184254_8	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0184254_8	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0184254_8	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0184254_12	Structural annotation	PF01475, MF_01909, NF041413, COG5045	NA	NA
UHGV-0184254_13	PHROG	phrog_18744	NA	unknown function
UHGV-0184254_13	eggNOG-mapper	1121101.HMPREF1532_02568	NA	NA
UHGV-0184254_14	eggNOG-mapper	272559.BF9343_2321	NA	NA
UHGV-0184254_16	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0184254_16	UniRef90	UniRef90_A0A3E5G704	Recombinase	NA
UHGV-0184254_16	eggNOG-mapper	1268240.ATFI01000007_gene442	Bacteriophage Lambda NinG protein	NA
UHGV-0184254_16	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0184254_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0184254_16	Structural annotation	PF05766	NA	NA
UHGV-0184254_17	PHROG	phrog_10608	NA	unknown function
UHGV-0184254_17	eggNOG-mapper	272559.BF9343_2324	NA	NA
UHGV-0184254_19	PHROG	phrog_19415	NA	unknown function
UHGV-0184254_19	UniRef90	UniRef90_E5CG75	NA	NA
UHGV-0184254_19	eggNOG-mapper	1123058.KB894219_gene165	COG NOG19076 non supervised orthologous group	NA
UHGV-0184254_19	Pfam	PF19808	NA	DUF6291
UHGV-0184254_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0184254_19	Structural annotation	PF19808	NA	NA
UHGV-0184254_20	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0184254_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0184254_20	UniRef90	UniRef90_E5CG76	DNA helicase	NA
UHGV-0184254_20	eggNOG-mapper	742766.HMPREF9455_01845	Participates in initiation and elongation during chromosome replication	NA
UHGV-0184254_20	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0184254_20	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0184254_20	COG	COG0305	Replicative DNA helicase	NA
UHGV-0184254_20	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0184254_21	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0184254_21	UniRef90	UniRef90_A0A412C6J5	NA	NA
UHGV-0184254_21	eggNOG-mapper	929703.KE386491_gene1515	NA	NA
UHGV-0184254_21	Pfam	PF11325	NA	DUF3127
UHGV-0184254_21	Structural annotation	PF11325, MF_00720, NF004476, COG2965	NA	NA
UHGV-0184254_22	eggNOG-mapper	1347393.HG726022_gene3594	NA	NA
UHGV-0184254_25	eggNOG-mapper	483216.BACEGG_00550	NA	NA
UHGV-0184254_28	PHROG	phrog_3474	NA	unknown function
UHGV-0184254_29	Structural annotation	PF17457	NA	NA
UHGV-0184254_33	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0184254_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0184254_33	UniRef90	UniRef90_A0A412BLW2	Recombinase	NA
UHGV-0184254_33	eggNOG-mapper	1347393.HG726021_gene454	Phage integrase family	NA
UHGV-0184254_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0184254_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0184254_33	Structural annotation	PF00589, MF_02055, NF040815, COG4974	NA	NA
UHGV-0184254_34	UniRef90	UniRef90_A0A496C6J9	Ribbon-helix-helix domain-containing protein	NA
UHGV-0184254_34	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0184254_36	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0184254_36	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0184254_36	UniRef90	UniRef90_E5CG94	HNH domain-containing protein	NA
UHGV-0184254_36	eggNOG-mapper	1268240.ATFI01000007_gene425	HNH endonuclease	NA
UHGV-0184254_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0184254_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0184254_37	UniRef90	UniRef90_UPI001C8C6915	NA	NA
UHGV-0184254_37	eggNOG-mapper	1268240.ATFI01000008_gene2008	NA	NA
UHGV-0184254_37	Pfam	PF16476	NA	DUF5053
UHGV-0184254_37	Structural annotation	PF16476	NA	NA
UHGV-0184254_38	UniRef90	UniRef90_A0A139JU77	Acyltransferase	NA
UHGV-0184254_39	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0184254_39	UniRef90	UniRef90_E5CG97	p27 family putative phage terminase, small subunit	NA
UHGV-0184254_39	eggNOG-mapper	1268240.ATFI01000007_gene422	Phage terminase, small subunit	NA
UHGV-0184254_39	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0184254_39	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0184254_39	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0184254_39	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0184254_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0184254_40	UniRef90	UniRef90_A0A3E5G6E2	Terminase large subunit	NA
UHGV-0184254_40	eggNOG-mapper	1268240.ATFI01000007_gene421	Phage Terminase	NA
UHGV-0184254_40	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0184254_40	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0184254_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0184254_40	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0184254_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-0184254_41	UniRef90	UniRef90_A0A1G6G5W6	Phage portal protein, HK97 family	NA
UHGV-0184254_41	eggNOG-mapper	1268240.ATFI01000007_gene420	Phage portal protein	NA
UHGV-0184254_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0184254_41	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0184254_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0184254_41	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0184254_42	KOfam	K06904	NA	NA
UHGV-0184254_42	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0184254_42	UniRef90	UniRef90_E5CGA0	HK97 family phage prohead protease	NA
UHGV-0184254_42	eggNOG-mapper	1268240.ATFI01000007_gene419	Caudovirus prohead serine protease	NA
UHGV-0184254_42	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0184254_42	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0184254_42	COG	COG3740	Phage head maturation protease	NA
UHGV-0184254_42	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0184254_43	PHROG	phrog_617	major head protein	head and packaging
UHGV-0184254_43	UniRef90	UniRef90_UPI001CCE278B	phage major capsid protein	NA
UHGV-0184254_43	eggNOG-mapper	1268240.ATFI01000007_gene418	Phage capsid family	NA
UHGV-0184254_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0184254_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0184254_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0184254_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0184254_44	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0184254_44	UniRef90	UniRef90_UPI001CCFABBE	head-tail connector protein	NA
UHGV-0184254_44	eggNOG-mapper	1268240.ATFI01000007_gene417	Phage gp6-like head-tail connector protein	NA
UHGV-0184254_44	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0184254_44	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0184254_44	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0184254_45	PHROG	phrog_25	head closure Hc1	connector
UHGV-0184254_45	UniRef90	UniRef90_A0A1G6G5N4	Phage head-tail joining protein	NA
UHGV-0184254_45	eggNOG-mapper	1347393.HG726026_gene2616	Phage head-tail joining protein	NA
UHGV-0184254_45	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0184254_45	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0184254_46	UniRef90	UniRef90_E2N7Z2	Putative phage protein, HK97 gp10 family	NA
UHGV-0184254_46	eggNOG-mapper	1268240.ATFI01000007_gene415	NA	NA
UHGV-0184254_46	Structural annotation	PF20039, TIGR01725	NA	NA
UHGV-0184254_47	UniRef90	UniRef90_UPI001CCBF085	NA	NA
UHGV-0184254_47	eggNOG-mapper	1347393.HG726026_gene2618	NA	NA
UHGV-0184254_47	Structural annotation	PF11367, COG5003	NA	NA
UHGV-0184254_48	PHROG	phrog_1407	major tail protein	tail
UHGV-0184254_48	UniRef90	UniRef90_A0A449I4M1	Phage major tail protein 2	NA
UHGV-0184254_48	eggNOG-mapper	1347393.HG726026_gene2619	Phage tail tube protein	NA
UHGV-0184254_48	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0184254_48	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0184254_49	eggNOG-mapper	1268240.ATFI01000007_gene412	NA	NA
UHGV-0184254_50	PHROG	phrog_2335	tail length tape measure protein	tail
UHGV-0184254_50	UniRef90	UniRef90_A0A1G6G5E1	Tape measure domain-containing protein	NA
UHGV-0184254_50	eggNOG-mapper	1268240.ATFI01000007_gene411	tape measure	NA
UHGV-0184254_50	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0184254_50	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0184254_50	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0184254_50	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0184254_51	PHROG	phrog_30639	NA	unknown function
UHGV-0184254_51	eggNOG-mapper	1268240.ATFI01000007_gene410	NA	NA
UHGV-0184254_51	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0184254_52	eggNOG-mapper	1268240.ATFI01000007_gene409	Phage minor structural protein	NA
UHGV-0184254_52	COG	COG4926	Phage-related protein	NA
UHGV-0184254_52	Structural annotation	PF09136	NA	NA
UHGV-0184254_53	eggNOG-mapper	226186.BT_4440	regulation of response to stimulus	NA
UHGV-0184254_53	COG	COG4886	Leucine-rich repeat (LRR) protein	NA