UHGV-0184316

Genome information

Genome length 55,242 bps

CDS count 97

Completeness 95.86% (high-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0184316
vOTU ID	vOTU-059659
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593853
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.86% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.17
Jumbo phage	No

Genome content
Genome length	55,242 bps
GC content	48.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	97
CDS density	84.31%
Average CDS length	482.47 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0184316_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0184316_2	PHROG	phrog_291	endolysin	lysis
UHGV-0184316_2	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0184316_2	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0184316_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0184316_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0184316_2	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0184316_3	PHROG	phrog_28526	NA	unknown function
UHGV-0184316_3	UniRef90	UniRef90_A0A415D4T1	NA	NA
UHGV-0184316_3	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0184316_3	Pfam	PF04255	NA	DUF433
UHGV-0184316_5	PHROG	phrog_6465	tail protein	tail
UHGV-0184316_5	eggNOG-mapper	1410624.JNKK01000017_gene1989	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0184316_5	COG	COG4675	Phage tail collar domain	NA
UHGV-0184316_5	Structural annotation	COG4675	NA	NA
UHGV-0184316_7	PHROG	phrog_18725	NA	unknown function
UHGV-0184316_7	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0184316_8	PHROG	phrog_13879	NA	unknown function
UHGV-0184316_8	UniRef90	UniRef90_A0A843H6J9	Dockerin type I repeat-containing protein	NA
UHGV-0184316_8	eggNOG-mapper	1408415.JHXL01000001_gene402	NA	NA
UHGV-0184316_8	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0184316_9	PHROG	phrog_1194	NA	unknown function
UHGV-0184316_9	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0184316_9	Pfam	PF20458	NA	DUF6711
UHGV-0184316_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0184316_10	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0184316_10	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0184316_10	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0184316_11	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0184316_12	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0184316_12	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0184316_12	Pfam	PF16478	NA	DUF5055
UHGV-0184316_12	Structural annotation	PF16478	NA	NA
UHGV-0184316_13	PHROG	phrog_158	major tail protein	tail
UHGV-0184316_13	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0184316_13	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0184316_13	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0184316_14	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0184316_15	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0184316_16	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0184316_17	UniRef90	UniRef90_A0A7C7ERG0	DNA-packaging protein	NA
UHGV-0184316_17	Structural annotation	TIGR01560	NA	NA
UHGV-0184316_18	PHROG	phrog_29	major head protein	head and packaging
UHGV-0184316_18	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0184316_18	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-0184316_18	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0184316_18	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0184316_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0184316_22	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0184316_22	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0184316_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0184316_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0184316_24	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0184316_24	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0184316_24	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0184316_24	COG	COG5410	NA	NA
UHGV-0184316_24	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0184316_25	Structural annotation	PF09202, MF_01177, TIGR02702, COG1846	NA	NA
UHGV-0184316_26	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0184316_26	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0184316_26	UniRef90	UniRef90_A0A3E2UAG1	Recombinase family protein	NA
UHGV-0184316_26	eggNOG-mapper	1280664.AUIX01000018_gene2067	Resolvase, N terminal domain	NA
UHGV-0184316_26	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0184316_26	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0184316_26	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0184316_29	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0184316_30	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0184316_30	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0184316_30	UniRef90	UniRef90_UPI001C039A6C	ORF6C domain-containing protein	NA
UHGV-0184316_30	eggNOG-mapper	1567013.A0A0A7RVQ9_9CAUD	AntA/AntB antirepressor	NA
UHGV-0184316_30	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0184316_30	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0184316_30	Structural annotation	PF10552, PF08346, TIGR02681, COG3561	NA	NA
UHGV-0184316_32	PHROG	phrog_14275	NA	unknown function
UHGV-0184316_32	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0184316_32	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0184316_32	Structural annotation	PF03843, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-0184316_33	PHROG	phrog_14275	NA	unknown function
UHGV-0184316_33	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0184316_33	Structural annotation	PF13157, MF_01537, NF007875, COG3123	NA	NA
UHGV-0184316_37	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0184316_37	eggNOG-mapper	88870.Q9ZX24_BPMT4	NA	NA
UHGV-0184316_40	PHROG	phrog_1709	NA	unknown function
UHGV-0184316_40	eggNOG-mapper	1280686.AUKE01000002_gene1328	NA	NA
UHGV-0184316_42	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0184316_42	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0184316_42	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-0184316_42	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0184316_42	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0184316_42	COG	COG0305	Replicative DNA helicase	NA
UHGV-0184316_42	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0184316_43	PHROG	phrog_15768	NA	unknown function
UHGV-0184316_43	UniRef90	UniRef90_A0A6N7WKT0	NA	NA
UHGV-0184316_43	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0184316_43	Pfam	PF19808	NA	DUF6291
UHGV-0184316_43	Structural annotation	PF19808	NA	NA
UHGV-0184316_44	UniRef90	UniRef90_UPI001AD832E5	Lar family restriction alleviation protein	NA
UHGV-0184316_44	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0184316_44	Structural annotation	PF14354	NA	NA
UHGV-0184316_47	PHROG	phrog_924	NA	unknown function
UHGV-0184316_47	UniRef90	UniRef90_A0A6G5YDC2	NA	NA
UHGV-0184316_47	Pfam	PF04448	NA	DUF551
UHGV-0184316_47	Structural annotation	NF041588	NA	NA
UHGV-0184316_48	Structural annotation	NF041588	NA	NA
UHGV-0184316_53	Structural annotation	PF16677	NA	NA
UHGV-0184316_55	Structural annotation	MF_00085, NF003076, COG0231	NA	NA
UHGV-0184316_60	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0184316_62	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0184316_62	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0184316_62	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0184316_62	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0184316_64	PHROG	phrog_35094	NA	unknown function
UHGV-0184316_64	eggNOG-mapper	457424.BFAG_02409	NA	NA
UHGV-0184316_66	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0184316_66	UniRef90	UniRef90_UPI0018DE920E	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-0184316_66	eggNOG-mapper	1434319.W5RV07_9CAUD	HNH endonuclease	NA
UHGV-0184316_66	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0184316_66	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0184316_66	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0184316_66	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0184316_67	PHROG	phrog_18107	NA	unknown function
UHGV-0184316_67	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0184316_67	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0184316_67	Structural annotation	PF05037	NA	NA
UHGV-0184316_68	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0184316_68	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0184316_68	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0184316_68	Pfam	PF13479	AAA domain	AAA_24
UHGV-0184316_68	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0184316_69	eggNOG-mapper	857293.CAAU_1555	Probable zinc-ribbon domain	NA
UHGV-0184316_69	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0184316_69	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0184316_69	Structural annotation	PF13451	NA	NA
UHGV-0184316_71	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0184316_71	UniRef90	UniRef90_A0A7Y4S123	Transcriptional repressor NrdR (Fragment)	NA
UHGV-0184316_71	eggNOG-mapper	1132855.KB913035_gene1070	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0184316_71	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0184316_71	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0184316_71	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0184316_72	Structural annotation	PF14143	NA	NA
UHGV-0184316_73	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0184316_73	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0184316_76	Structural annotation	PF10922	NA	NA
UHGV-0184316_77	PHROG	phrog_15946	NA	unknown function
UHGV-0184316_77	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0184316_78	PHROG	phrog_4652	NA	unknown function
UHGV-0184316_78	eggNOG-mapper	397290.C810_01459	NA	NA
UHGV-0184316_78	Structural annotation	TIGR02582, COG1604	NA	NA
UHGV-0184316_79	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0184316_79	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0184316_79	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0184316_79	eggNOG-mapper	1423775.BAMN01000006_gene1075	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0184316_79	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0184316_79	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0184316_79	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0184316_79	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0184316_80	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0184316_80	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0184316_80	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0184316_81	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0184316_81	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-0184316_81	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0184316_81	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0184316_81	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0184316_84	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0184316_84	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0184316_84	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0184316_84	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0184316_85	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0184316_85	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0184316_85	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0184316_85	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0184316_85	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0184316_85	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0184316_85	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0184316_86	eggNOG-mapper	1235802.C823_04783	NA	NA
UHGV-0184316_87	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0184316_87	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0184316_87	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0184316_87	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0184316_87	Pfam	PF13614	AAA domain	AAA_31
UHGV-0184316_87	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0184316_87	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0184316_89	Structural annotation	PF07878	NA	NA
UHGV-0184316_90	UniRef90	UniRef90_UPI0009300B98	CopG family transcriptional regulator	NA
UHGV-0184316_90	eggNOG-mapper	478749.BRYFOR_07643	NA	NA
UHGV-0184316_90	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0184316_91	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0184316_91	UniRef90	UniRef90_UPI001D11EAA8	toxin Bro	NA
UHGV-0184316_91	eggNOG-mapper	556261.HMPREF0240_03657	Phage antirepressor protein	NA
UHGV-0184316_91	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0184316_91	COG	COG3617	Prophage antirepressor	NA
UHGV-0184316_91	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0184316_92	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0184316_93	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0184316_94	PHROG	phrog_16490	NA	unknown function
UHGV-0184316_94	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA