UHGV-0184317

Genome information

Genome length 55,862 bps

CDS count 110

Completeness 67.36% (medium-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0184317
vOTU ID	vOTU-029007
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593852
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.18
Jumbo phage	No

Genome content
Genome length	55,862 bps
GC content	38.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	110
CDS density	88.93%
Average CDS length	453.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0184317_2	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0184317_2	UniRef90	UniRef90_A0A415VE06	Phage antirepressor Ant	NA
UHGV-0184317_2	eggNOG-mapper	1347393.HG726022_gene3608	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0184317_2	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0184317_2	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0184317_2	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0184317_2	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0184317_3	PHROG	phrog_236	nucleotide kinase	other
UHGV-0184317_3	UniRef90	UniRef90_UPI001D179E87	NA	NA
UHGV-0184317_3	eggNOG-mapper	1458670.W8NNR2_9CAUD	NA	NA
UHGV-0184317_3	Pfam	PF11753	NA	DUF3310
UHGV-0184317_3	Structural annotation	PF16090, NF037951, COG2139	NA	NA
UHGV-0184317_6	Structural annotation	PF04480, NF007294, COG3727	NA	NA
UHGV-0184317_7	Structural annotation	PF00075, MF_00042, NF041306, COG0328	NA	NA
UHGV-0184317_8	Structural annotation	PF20024, NF041413, COG0640	NA	NA
UHGV-0184317_9	Structural annotation	PF12198	NA	NA
UHGV-0184317_12	UniRef90	UniRef90_A0A7H1MQD5	NA	NA
UHGV-0184317_12	eggNOG-mapper	445970.ALIPUT_02650	NA	NA
UHGV-0184317_12	Structural annotation	PF12987	NA	NA
UHGV-0184317_13	PHROG	phrog_36980	NA	unknown function
UHGV-0184317_13	eggNOG-mapper	470145.BACCOP_01160	NA	NA
UHGV-0184317_14	PHROG	phrog_19572	NA	unknown function
UHGV-0184317_14	UniRef90	UniRef90_A0A3R6I0A2	NA	NA
UHGV-0184317_14	eggNOG-mapper	537011.PREVCOP_04244	NA	NA
UHGV-0184317_14	Pfam	PF14902	NA	DUF4494
UHGV-0184317_14	Structural annotation	PF14902	NA	NA
UHGV-0184317_15	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0184317_18	UniRef90	UniRef90_A0A7H1MQE1	Helix-turn-helix domain-containing protein	NA
UHGV-0184317_18	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0184317_18	Structural annotation	PF02796, NF040595	NA	NA
UHGV-0184317_23	PHROG	phrog_824	NA	unknown function
UHGV-0184317_23	UniRef90	UniRef90_A0A7H1MQE6	VRR-NUC domain-containing protein	NA
UHGV-0184317_23	eggNOG-mapper	1229276.DI53_1617	VRR_NUC	NA
UHGV-0184317_23	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0184317_28	Structural annotation	PF18852	NA	NA
UHGV-0184317_36	PHROG	phrog_27742	NA	unknown function
UHGV-0184317_36	UniRef90	UniRef90_A0A415VF75	NA	NA
UHGV-0184317_36	eggNOG-mapper	573064.Mefer_1521	NA	NA
UHGV-0184317_36	Pfam	PF14088	NA	DUF4268
UHGV-0184317_36	Structural annotation	PF14088, PF01939, MF_00722, NF011857, COG1637	NA	NA
UHGV-0184317_37	Structural annotation	PF06776	NA	NA
UHGV-0184317_38	Structural annotation	PF13424, NF011886	NA	NA
UHGV-0184317_39	Structural annotation	PF13069	NA	NA
UHGV-0184317_41	eggNOG-mapper	272562.CA_C1147	NA	NA
UHGV-0184317_45	KOfam	K05521	draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]	NA
UHGV-0184317_45	PHROG	phrog_6572	ADP-ribosylglycohydrolase	other
UHGV-0184317_45	UniRef90	UniRef90_A0A7H1MQG9	ADP-ribosylglycohydrolase	NA
UHGV-0184317_45	eggNOG-mapper	445970.ALIPUT_02656	ADP-ribosylglycohydrolase	NA
UHGV-0184317_45	Pfam	PF03747	ADP-ribosylglycohydrolase	ADP_ribosyl_GH
UHGV-0184317_45	COG	COG1397	ADP-ribosylglycohydrolase	NA
UHGV-0184317_45	Structural annotation	PF03747, TIGR02662, COG1397	NA	NA
UHGV-0184317_47	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0184317_47	PHROG	phrog_16625	NA	unknown function
UHGV-0184317_47	UniRef90	UniRef90_A0A7H1MQH1	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0184317_47	eggNOG-mapper	445970.ALIPUT_02658	NA	NA
UHGV-0184317_47	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0184317_47	Structural annotation	PF03496, PF06152, MF_04139, NF040688	NA	NA
UHGV-0184317_48	PHROG	phrog_64	portal protein	head and packaging
UHGV-0184317_48	UniRef90	UniRef90_A0A7H1MQH2	Phage portal protein	NA
UHGV-0184317_48	eggNOG-mapper	1121100.JCM6294_1089	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0184317_48	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0184317_48	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0184317_49	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0184317_49	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0184317_49	UniRef90	UniRef90_A0A7H1MQH3	PBSX family phage terminase large subunit	NA
UHGV-0184317_49	eggNOG-mapper	1227266.HMPREF1551_00524	Phage terminase, large subunit, PBSX family	NA
UHGV-0184317_49	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0184317_49	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0184317_49	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0184317_49	COG	COG1783	Phage terminase large subunit	NA
UHGV-0184317_49	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0184317_52	KOfam	K01495	GCH1, folE; GTP cyclohydrolase IA [EC:3.5.4.16]	NA
UHGV-0184317_52	PHROG	phrog_2197	GTP cyclohydrolase	other
UHGV-0184317_52	UniRef90	UniRef90_A0A415VF94	GTP cyclohydrolase 1	NA
UHGV-0184317_52	eggNOG-mapper	484018.BACPLE_00674	GTP cyclohydrolase I	NA
UHGV-0184317_52	Pfam	PF01227	GTP cyclohydrolase I	GTP_cyclohydroI
UHGV-0184317_52	NCBIFam	NF006826.0	GTP cyclohydrolase I FolE	NA
UHGV-0184317_52	COG	COG0302	GTP cyclohydrolase I	NA
UHGV-0184317_52	HAMAP	MF_00223	GTP cyclohydrolase 1 [folE]	NA
UHGV-0184317_52	Structural annotation	PF01227, MF_00223, NF006826, COG0302	NA	NA
UHGV-0184317_53	Structural annotation	NF007241	NA	NA
UHGV-0184317_54	KOfam	K10026	queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]	NA
UHGV-0184317_54	PHROG	phrog_2076	QueE-like radical SAM domain	moron, auxiliary metabolic gene and host takeover
UHGV-0184317_54	UniRef90	UniRef90_A0A7H1MQH8	7-carboxy-7-deazaguanine synthase	NA
UHGV-0184317_54	eggNOG-mapper	1284775.HMPREF1640_00105	Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds	NA
UHGV-0184317_54	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0184317_54	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-0184317_54	HAMAP	MF_00917	7-carboxy-7-deazaguanine synthase [queE]	NA
UHGV-0184317_54	Structural annotation	PF04055, MF_00917, TIGR04508, COG0602	NA	NA
UHGV-0184317_55	KOfam	K01737	queD, ptpS, PTS; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]	NA
UHGV-0184317_55	PHROG	phrog_2389	QueD-like 6-pyruvoyl-tetrahydropterin synthase	moron, auxiliary metabolic gene and host takeover
UHGV-0184317_55	UniRef90	UniRef90_A0A7H1MQH9	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA
UHGV-0184317_55	eggNOG-mapper	742726.HMPREF9448_01648	6-pyruvoyl tetrahydropterin synthase	NA
UHGV-0184317_55	Pfam	PF01242	6-pyruvoyl tetrahydropterin synthase	PTPS
UHGV-0184317_55	NCBIFam	TIGR03367.1	6-carboxytetrahydropterin synthase QueD	NA
UHGV-0184317_55	COG	COG0720	6-pyruvoyl-tetrahydropterin synthase	NA
UHGV-0184317_55	Structural annotation	PF01242, TIGR00039, COG0720	NA	NA
UHGV-0184317_56	PHROG	phrog_36422	NA	unknown function
UHGV-0184317_56	UniRef90	UniRef90_R6EF68	CdiA_C domain-containing protein	NA
UHGV-0184317_56	Structural annotation	PF18451	NA	NA
UHGV-0184317_57	KOfam	K09125	yhhQ; queuosine precursor transporter	NA
UHGV-0184317_57	PHROG	phrog_4899	NA	unknown function
UHGV-0184317_57	UniRef90	UniRef90_A0A843HVU8	Probable queuosine precursor transporter	NA
UHGV-0184317_57	eggNOG-mapper	445970.ALIPUT_02665	queuosine salvage	NA
UHGV-0184317_57	Pfam	PF02592	Putative vitamin uptake transporter	Vut_1
UHGV-0184317_57	NCBIFam	TIGR00697.1	queuosine precursor transporter	NA
UHGV-0184317_57	COG	COG1738	NA	NA
UHGV-0184317_57	HAMAP	MF_02088	Probable queuosine precursor transporter	NA
UHGV-0184317_57	Structural annotation	PF02592, MF_02088, TIGR00697, COG1738	NA	NA
UHGV-0184317_58	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0184317_58	Structural annotation	PF00218, MF_01634, TIGR00449, COG3605	NA	NA
UHGV-0184317_59	PHROG	phrog_17812	NA	unknown function
UHGV-0184317_59	eggNOG-mapper	1123023.JIAI01000004_gene8326	NA	NA
UHGV-0184317_59	Structural annotation	PF01242, TIGR00039, COG0720	NA	NA
UHGV-0184317_60	PHROG	phrog_17622	NA	unknown function
UHGV-0184317_60	UniRef90	UniRef90_A0A1H4E8V3	ParB-like nuclease domain-containing protein	NA
UHGV-0184317_60	eggNOG-mapper	445970.ALIPUT_02668	NA	NA
UHGV-0184317_60	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0184317_60	Structural annotation	PF02195, MF_02015, TIGR03764	NA	NA
UHGV-0184317_61	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0184317_61	UniRef90	UniRef90_A0A7H1MQI5	NA	NA
UHGV-0184317_61	eggNOG-mapper	762982.HMPREF9442_01170	NA	NA
UHGV-0184317_61	Pfam	PF14386	NA	DUF4417
UHGV-0184317_61	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0184317_61	Structural annotation	PF14386	NA	NA
UHGV-0184317_62	Pfam	PF08279	HTH domain	HTH_11
UHGV-0184317_62	Structural annotation	PF04492, TIGR01714	NA	NA
UHGV-0184317_65	Structural annotation	PF18195, COG5475	NA	NA
UHGV-0184317_68	PHROG	phrog_17873	NA	unknown function
UHGV-0184317_73	PHROG	phrog_8905	NA	unknown function
UHGV-0184317_74	PHROG	phrog_6726	NA	unknown function
UHGV-0184317_78	UniRef90	UniRef90_A0A3R6HTB0	NA	NA
UHGV-0184317_78	Pfam	PF04448	NA	DUF551
UHGV-0184317_78	Structural annotation	PF07875, TIGR02501	NA	NA
UHGV-0184317_79	Structural annotation	PF13069	NA	NA
UHGV-0184317_83	PHROG	phrog_8684	NA	unknown function
UHGV-0184317_83	UniRef90	UniRef90_A0A3R6HQ56	YopX domain-containing protein	NA
UHGV-0184317_83	eggNOG-mapper	1486428.A0A097BY92_9CAUD	YopX protein	NA
UHGV-0184317_83	Pfam	PF09643	YopX protein	YopX
UHGV-0184317_83	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0184317_87	Structural annotation	PF13783	NA	NA
UHGV-0184317_89	UniRef90	UniRef90_A0A413CD79	NA	NA
UHGV-0184317_89	Pfam	PF11195	NA	DUF2829
UHGV-0184317_89	Structural annotation	PF11195	NA	NA
UHGV-0184317_90	PHROG	phrog_625	NA	unknown function
UHGV-0184317_90	UniRef90	UniRef90_A0A6I1RWR8	ASCH domain-containing protein	NA
UHGV-0184317_90	eggNOG-mapper	926549.KI421517_gene2497	NA	NA
UHGV-0184317_90	Structural annotation	PF12961	NA	NA
UHGV-0184317_92	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0184317_92	UniRef90	UniRef90_A0A3E5E2Y4	HNH endonuclease	NA
UHGV-0184317_92	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0184317_92	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0184317_92	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0184317_92	Structural annotation	COG1403	NA	NA
UHGV-0184317_94	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0184317_94	PHROG	phrog_1	integrase	integration and excision
UHGV-0184317_94	UniRef90	UniRef90_A0A7H1MQK8	Tyrosine-type recombinase/integrase	NA
UHGV-0184317_94	eggNOG-mapper	272559.BF9343_2363	Phage integrase SAM-like domain	NA
UHGV-0184317_94	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0184317_94	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0184317_94	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0184317_94	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0184317_94	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0184317_95	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0184317_95	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0184317_95	UniRef90	UniRef90_A0A7H1MQ96	Helix-turn-helix transcriptional regulator	NA
UHGV-0184317_95	eggNOG-mapper	1122985.HMPREF1991_02233	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0184317_95	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0184317_95	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0184317_95	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0184317_97	UniRef90	UniRef90_A0A415VGT1	DNA-binding protein	NA
UHGV-0184317_97	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0184317_97	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0184317_98	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0184317_98	eggNOG-mapper	1122992.CBQQ010000072_gene1965	NA	NA
UHGV-0184317_100	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0184317_100	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0184317_100	UniRef90	UniRef90_A0A415VGU6	AAA_23 domain-containing protein	NA
UHGV-0184317_100	eggNOG-mapper	619693.HMPREF6745_2489	AAA domain	NA
UHGV-0184317_100	Pfam	PF13476	AAA domain	AAA_23
UHGV-0184317_100	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0184317_100	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0184317_101	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0184317_101	UniRef90	UniRef90_A0A7H1MQA1	Recombinase RecT	NA
UHGV-0184317_101	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0184317_101	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0184317_102	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0184317_102	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0184317_102	UniRef90	UniRef90_A0A7H1MQA2	MBL fold metallo-hydrolase	NA
UHGV-0184317_102	eggNOG-mapper	357276.EL88_12605	Metallo-beta-lactamase superfamily	NA
UHGV-0184317_102	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0184317_102	dbAPIS	APIS058	NA	NA
UHGV-0184317_102	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0184317_102	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0184317_105	PHROG	phrog_9236	pyrophosphatase	other
UHGV-0184317_105	UniRef90	UniRef90_F3QSQ5	Conserved domain protein	NA
UHGV-0184317_105	eggNOG-mapper	411901.BACCAC_01178	NA	NA
UHGV-0184317_107	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0184317_107	PHROG	phrog_181	endolysin	lysis
UHGV-0184317_107	UniRef90	UniRef90_A0A7H1MQA5	Glycoside hydrolase family 19 protein	NA
UHGV-0184317_107	eggNOG-mapper	160488.PP_3066	hmm pf00182	NA
UHGV-0184317_107	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0184317_107	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0184317_107	Structural annotation	PF00182, COG3179	NA	NA
UHGV-0184317_108	UniRef90	UniRef90_J9GTV3	Membrane protein	NA
UHGV-0184317_108	eggNOG-mapper	1121097.JCM15093_2703	NA	NA