UHGV-0184320

Genome information

Genome length 59,005 bps

CDS count 82

Completeness 95.41% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0184320
vOTU ID	vOTU-071745
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593849
BioSample	SAMN09781755
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.41% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	31
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.59
Jumbo phage	No

Genome content
Genome length	59,005 bps
GC content	38.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	82
CDS density	92.70%
Average CDS length	669.33 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0184320_2	PHROG	phrog_4303	NA	unknown function
UHGV-0184320_2	eggNOG-mapper	742733.HMPREF9469_05038	NA	NA
UHGV-0184320_3	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0184320_3	UniRef90	UniRef90_G9RWL4	HTH luxR-type domain-containing protein	NA
UHGV-0184320_3	eggNOG-mapper	665956.HMPREF1032_00665	Bacterial regulatory proteins, luxR family	NA
UHGV-0184320_3	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0184320_3	Structural annotation	PF05183	NA	NA
UHGV-0184320_4	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0184320_4	UniRef90	UniRef90_A0A3A9IQR6	NA	NA
UHGV-0184320_4	eggNOG-mapper	742740.HMPREF9474_02279	NA	NA
UHGV-0184320_4	Pfam	PF10926	NA	DUF2800
UHGV-0184320_4	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0184320_5	eggNOG-mapper	742740.HMPREF9474_02280	NA	NA
UHGV-0184320_5	Structural annotation	PF01870, COG1591	NA	NA
UHGV-0184320_7	Structural annotation	NF041197	NA	NA
UHGV-0184320_8	UniRef90	UniRef90_A0A316PAF7	Cu_amine_oxidN1 domain-containing protein	NA
UHGV-0184320_8	eggNOG-mapper	1203606.HMPREF1526_00218	Copper amine oxidase N-terminal domain	NA
UHGV-0184320_8	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0184320_8	COG	COG1555	DNA uptake protein ComE or related DNA-binding protein	NA
UHGV-0184320_10	eggNOG-mapper	273068.TTE2025	NA	NA
UHGV-0184320_11	PHROG	phrog_6568	NA	unknown function
UHGV-0184320_11	eggNOG-mapper	428125.CLOLEP_01394	NA	NA
UHGV-0184320_12	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0184320_12	UniRef90	UniRef90_A0A7X7CG71	Metallophos_2 domain-containing protein	NA
UHGV-0184320_12	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0184320_12	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0184320_15	PHROG	phrog_6721	NA	unknown function
UHGV-0184320_15	eggNOG-mapper	428125.CLOLEP_01387	NA	NA
UHGV-0184320_15	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0184320_19	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0184320_19	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0184320_19	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0184320_26	PHROG	phrog_19852	NA	unknown function
UHGV-0184320_26	eggNOG-mapper	742740.HMPREF9474_02297	NA	NA
UHGV-0184320_28	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0184320_28	UniRef90	UniRef90_A0A4Q5C8W0	Helicase ATP-binding domain-containing protein	NA
UHGV-0184320_28	eggNOG-mapper	665950.HMPREF1025_01961	Helicase conserved C-terminal domain	NA
UHGV-0184320_28	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0184320_28	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0184320_28	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-0184320_29	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0184320_29	PHROG	phrog_5696	NA	unknown function
UHGV-0184320_29	UniRef90	UniRef90_A0A1Y4N8G4	Restriction endonuclease	NA
UHGV-0184320_29	eggNOG-mapper	665950.HMPREF1025_01959	N-6 DNA Methylase	NA
UHGV-0184320_29	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0184320_29	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0184320_29	Structural annotation	PF05185, TIGR00497	NA	NA
UHGV-0184320_30	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0184320_30	UniRef90	UniRef90_A0A7X7CP10	Bro-N domain-containing protein	NA
UHGV-0184320_30	eggNOG-mapper	742733.HMPREF9469_05065	NA	NA
UHGV-0184320_30	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0184320_31	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-0184320_31	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0184320_31	UniRef90	UniRef90_A0A7V6W4J4	SF3 helicase domain-containing protein	NA
UHGV-0184320_31	eggNOG-mapper	665956.HMPREF1032_00647	DNA polymerase type-B family	NA
UHGV-0184320_31	Pfam	PF19263	NA	DUF5906
UHGV-0184320_31	Structural annotation	PF00136, PF05272, PF10991, PF09250, MF_04100, MF_00016, NF011296, TIGR00592, COG3378, COG0417	NA	NA
UHGV-0184320_33	PHROG	phrog_4678	NA	unknown function
UHGV-0184320_33	eggNOG-mapper	742733.HMPREF9469_05069	NA	NA
UHGV-0184320_34	PHROG	phrog_4695	NA	unknown function
UHGV-0184320_34	UniRef90	UniRef90_UPI001D08D232	YtxH domain-containing protein	NA
UHGV-0184320_34	eggNOG-mapper	411460.RUMTOR_02032	NA	NA
UHGV-0184320_35	PHROG	phrog_14968	NA	unknown function
UHGV-0184320_35	UniRef90	UniRef90_A0A3A9JBK4	Histidine kinase	NA
UHGV-0184320_35	eggNOG-mapper	411460.RUMTOR_02031	NA	NA
UHGV-0184320_36	eggNOG-mapper	537013.CLOSTMETH_03127	NA	NA
UHGV-0184320_37	PHROG	phrog_2152	NA	unknown function
UHGV-0184320_37	UniRef90	UniRef90_UPI0018AB5C53	NA	NA
UHGV-0184320_37	eggNOG-mapper	665956.HMPREF1032_00640	NA	NA
UHGV-0184320_37	Pfam	PF19880	NA	DUF6353
UHGV-0184320_37	Structural annotation	PF19880	NA	NA
UHGV-0184320_38	PHROG	phrog_236	nucleotide kinase	other
UHGV-0184320_38	UniRef90	UniRef90_A0A173Z9D7	NA	NA
UHGV-0184320_38	eggNOG-mapper	742740.HMPREF9474_02311	NA	NA
UHGV-0184320_38	Pfam	PF11753	NA	DUF3310
UHGV-0184320_39	PHROG	phrog_4079	NA	unknown function
UHGV-0184320_39	eggNOG-mapper	742740.HMPREF9474_02312	NA	NA
UHGV-0184320_40	PHROG	phrog_15567	NA	unknown function
UHGV-0184320_40	eggNOG-mapper	411460.RUMTOR_02026	NA	NA
UHGV-0184320_40	Structural annotation	MF_00273, COG2157	NA	NA
UHGV-0184320_42	PHROG	phrog_2152	NA	unknown function
UHGV-0184320_42	UniRef90	UniRef90_UPI0011CA98EE	NA	NA
UHGV-0184320_42	eggNOG-mapper	411460.RUMTOR_02024	NA	NA
UHGV-0184320_42	Pfam	PF19880	NA	DUF6353
UHGV-0184320_42	Structural annotation	PF19880	NA	NA
UHGV-0184320_43	PHROG	phrog_21980	NA	unknown function
UHGV-0184320_43	eggNOG-mapper	742733.HMPREF9469_05080	NA	NA
UHGV-0184320_45	PHROG	phrog_19711	NA	unknown function
UHGV-0184320_45	eggNOG-mapper	742733.HMPREF9469_05082	NA	NA
UHGV-0184320_46	PHROG	phrog_2152	NA	unknown function
UHGV-0184320_46	UniRef90	UniRef90_UPI0018A9A5A5	NA	NA
UHGV-0184320_46	eggNOG-mapper	665950.HMPREF1025_01940	NA	NA
UHGV-0184320_46	Pfam	PF19880	NA	DUF6353
UHGV-0184320_46	Structural annotation	PF19880	NA	NA
UHGV-0184320_47	PHROG	phrog_10740	NA	unknown function
UHGV-0184320_47	eggNOG-mapper	742740.HMPREF9474_02319	NA	NA
UHGV-0184320_50	PHROG	phrog_17256	NA	unknown function
UHGV-0184320_50	eggNOG-mapper	428125.CLOLEP_01353	NA	NA
UHGV-0184320_51	PHROG	phrog_15866	NA	unknown function
UHGV-0184320_51	eggNOG-mapper	742740.HMPREF9474_02324	NA	NA
UHGV-0184320_52	PHROG	phrog_15309	NA	unknown function
UHGV-0184320_52	UniRef90	UniRef90_A0A6M5GJ73	Beta-lactamase induction signal transducer protein	NA
UHGV-0184320_52	eggNOG-mapper	665956.HMPREF1032_00626	NA	NA
UHGV-0184320_53	PHROG	phrog_2834	NA	unknown function
UHGV-0184320_53	UniRef90	UniRef90_A0A413LL35	DNA-directed RNA polymerase	NA
UHGV-0184320_53	eggNOG-mapper	428125.CLOLEP_01349	NA	NA
UHGV-0184320_54	PHROG	phrog_11237	NA	unknown function
UHGV-0184320_54	eggNOG-mapper	742740.HMPREF9474_02326	NA	NA
UHGV-0184320_55	PHROG	phrog_6058	NA	unknown function
UHGV-0184320_55	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-0184320_55	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0184320_57	PHROG	phrog_10675	NA	unknown function
UHGV-0184320_57	UniRef90	UniRef90_A0A3A9J627	NA	NA
UHGV-0184320_57	eggNOG-mapper	428125.CLOLEP_01346	COG NOG23522 non supervised orthologous group	NA
UHGV-0184320_57	Pfam	PF20020	NA	DUF6431
UHGV-0184320_57	COG	COG3464	Transposase	NA
UHGV-0184320_57	Structural annotation	PF20020, TIGR03831, COG3436	NA	NA
UHGV-0184320_58	KOfam	K14059	int; integrase	NA
UHGV-0184320_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0184320_58	UniRef90	UniRef90_A0A3A9IN41	Zinc-ribbon domain-containing protein	NA
UHGV-0184320_58	eggNOG-mapper	428125.CLOLEP_01345	Belongs to the 'phage' integrase family	NA
UHGV-0184320_58	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0184320_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0184320_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0184320_58	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0184320_59	PHROG	phrog_1129	holin	lysis
UHGV-0184320_59	UniRef90	UniRef90_A0A7G9G5J1	Phage holin family protein	NA
UHGV-0184320_59	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0184320_59	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0184320_59	Structural annotation	PF06946	NA	NA
UHGV-0184320_60	PHROG	phrog_4105	NA	unknown function
UHGV-0184320_60	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0184320_62	eggNOG-mapper	1120998.AUFC01000030_gene2248	NA	NA
UHGV-0184320_63	Structural annotation	PF07761	NA	NA
UHGV-0184320_64	PHROG	phrog_3558	tail protein	tail
UHGV-0184320_64	UniRef90	UniRef90_UPI00195D7162	phage tail protein	NA
UHGV-0184320_64	eggNOG-mapper	1111121.HMPREF1247_1242	Prophage endopeptidase tail	NA
UHGV-0184320_64	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0184320_64	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0184320_64	COG	COG4926	Phage-related protein	NA
UHGV-0184320_64	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0184320_65	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0184320_65	UniRef90	UniRef90_A0A351TQW0	MtfA protein	NA
UHGV-0184320_65	eggNOG-mapper	862969.SCI_1226	NA	NA
UHGV-0184320_65	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-0184320_66	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0184320_66	UniRef90	UniRef90_A0A1C5N2E1	Phage-related protein	NA
UHGV-0184320_66	eggNOG-mapper	665950.HMPREF1025_02007	phage tail tape measure protein	NA
UHGV-0184320_66	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0184320_66	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0184320_66	COG	COG5412	Phage-related protein	NA
UHGV-0184320_67	UniRef90	UniRef90_UPI001D0673C2	HK97 gp10 family phage protein	NA
UHGV-0184320_67	eggNOG-mapper	742733.HMPREF9469_05021	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0184320_67	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0184320_67	Structural annotation	TIGR01725	NA	NA
UHGV-0184320_68	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0184320_68	PHROG	phrog_670	endolysin	lysis
UHGV-0184320_68	UniRef90	UniRef90_UPI0015A79365	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0184320_68	eggNOG-mapper	1499689.CCNN01000007_gene1846	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0184320_68	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0184320_68	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0184320_68	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0184320_69	PHROG	phrog_4338	NA	unknown function
UHGV-0184320_69	eggNOG-mapper	742733.HMPREF9469_05023	NA	NA
UHGV-0184320_70	PHROG	phrog_4282	NA	unknown function
UHGV-0184320_70	eggNOG-mapper	742740.HMPREF9474_02266	NA	NA
UHGV-0184320_71	PHROG	phrog_2645	major tail protein	tail
UHGV-0184320_71	UniRef90	UniRef90_A0A2U8UI58	Major tail protein	NA
UHGV-0184320_71	eggNOG-mapper	742740.HMPREF9474_02267	NA	NA
UHGV-0184320_71	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0184320_72	eggNOG-mapper	428125.CLOLEP_01414	NA	NA
UHGV-0184320_72	Structural annotation	PF20765	NA	NA
UHGV-0184320_73	PHROG	phrog_4270	NA	unknown function
UHGV-0184320_73	eggNOG-mapper	411460.RUMTOR_01344	NA	NA
UHGV-0184320_73	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0184320_75	KOfam	K06904	NA	NA
UHGV-0184320_75	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0184320_75	UniRef90	UniRef90_UPI001967B1BC	phage major capsid protein	NA
UHGV-0184320_75	eggNOG-mapper	411460.RUMTOR_01346	NA	NA
UHGV-0184320_75	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0184320_75	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-0184320_76	PHROG	phrog_12	portal protein	head and packaging
UHGV-0184320_76	UniRef90	UniRef90_A0A3A9JBP1	Phage portal protein	NA
UHGV-0184320_76	eggNOG-mapper	428125.CLOLEP_01411	Phage portal protein	NA
UHGV-0184320_76	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0184320_76	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0184320_77	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0184320_77	UniRef90	UniRef90_A0A1C5N1A3	Phage terminase-like protein, large subunit	NA
UHGV-0184320_77	eggNOG-mapper	428125.CLOLEP_01409	Phage Terminase	NA
UHGV-0184320_77	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0184320_77	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0184320_77	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0184320_78	PHROG	phrog_7021	NA	unknown function
UHGV-0184320_78	eggNOG-mapper	428125.CLOLEP_01408	NA	NA
UHGV-0184320_79	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-0184320_79	UniRef90	UniRef90_A0A373C8E1	Structural protein	NA
UHGV-0184320_79	eggNOG-mapper	428125.CLOLEP_01407	NA	NA
UHGV-0184320_80	UniRef90	UniRef90_A0A6N9P621	SH3 domain-containing protein	NA
UHGV-0184320_80	eggNOG-mapper	428125.CLOLEP_01406	Bacterial SH3 domain	NA
UHGV-0184320_80	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0184320_80	Structural annotation	PF18342, TIGR04457, COG4991	NA	NA
UHGV-0184320_81	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0184320_81	eggNOG-mapper	665956.HMPREF1032_00668	NA	NA
UHGV-0184320_82	PHROG	phrog_4259	NA	unknown function
UHGV-0184320_82	UniRef90	UniRef90_D4P7B9	Gp008	NA
UHGV-0184320_82	eggNOG-mapper	742740.HMPREF9474_02276	NA	NA