UHGV-0184478

Genome information

Genome length 32,152 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9687

Prediction confidence Confident

Genome information
Genome ID	UHGV-0184478
vOTU ID	vOTU-063846
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595855
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9687
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.15
Jumbo phage	No

Genome content
Genome length	32,152 bps
GC content	36.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	86.78%
Average CDS length	511.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0184478_1	UniRef90	UniRef90_A0A412PI92	Peptidase_C39_2 domain-containing protein	NA
UHGV-0184478_1	eggNOG-mapper	679192.HMPREF9013_1066	Peptidase_C39 like family	NA
UHGV-0184478_1	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0184478_3	eggNOG-mapper	706433.HMPREF9430_01203	NA	NA
UHGV-0184478_6	eggNOG-mapper	706433.HMPREF9430_01205	NA	NA
UHGV-0184478_7	KOfam	K07487	K07487; transposase	NA
UHGV-0184478_7	PHROG	phrog_8928	NA	unknown function
UHGV-0184478_7	UniRef90	UniRef90_E7MNT6	Tnp_DDE_dom domain-containing protein	NA
UHGV-0184478_7	eggNOG-mapper	706433.HMPREF9430_01206	NA	NA
UHGV-0184478_7	Pfam	PF13751	Transposase DDE domain	DDE_Tnp_1_6
UHGV-0184478_7	COG	COG3666	Transposase, IS1182 family	NA
UHGV-0184478_8	eggNOG-mapper	888727.HMPREF9092_0965	domain protein	NA
UHGV-0184478_8	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA
UHGV-0184478_11	eggNOG-mapper	1123263.AUKY01000061_gene2017	NA	NA
UHGV-0184478_11	Structural annotation	PF09274, COG4710	NA	NA
UHGV-0184478_12	PHROG	phrog_9233	holin	lysis
UHGV-0184478_12	UniRef90	UniRef90_UPI000412C652	phage holin	NA
UHGV-0184478_12	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0184478_12	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0184478_12	Structural annotation	PF16938	NA	NA
UHGV-0184478_14	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0184478_14	PHROG	phrog_291	endolysin	lysis
UHGV-0184478_14	UniRef90	UniRef90_E7MNY0	Glycosyl hydrolase family 25	NA
UHGV-0184478_14	eggNOG-mapper	706433.HMPREF9430_01251	Glycosyl hydrolases family 25	NA
UHGV-0184478_14	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0184478_14	Pfam	PF01476	LysM domain	LysM
UHGV-0184478_14	COG	COG1388	LysM repeat	NA
UHGV-0184478_14	Structural annotation	PF01183, PF01476, TIGR02899, NF007360, COG3757, COG1388	NA	NA
UHGV-0184478_15	PHROG	phrog_918	NA	unknown function
UHGV-0184478_15	UniRef90	UniRef90_UPI000DA36812	NA	NA
UHGV-0184478_15	eggNOG-mapper	1123263.AUKY01000046_gene482	NA	NA
UHGV-0184478_15	Pfam	PF19791	NA	DUF6275
UHGV-0184478_15	Structural annotation	PF19791	NA	NA
UHGV-0184478_17	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0184478_17	UniRef90	UniRef90_A0A412PAL3	Prophage_tail domain-containing protein	NA
UHGV-0184478_17	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0184478_17	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0184478_17	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0184478_17	COG	COG4926	Phage-related protein	NA
UHGV-0184478_17	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0184478_18	UniRef90	UniRef90_UPI001C5BCD64	phage tail family protein	NA
UHGV-0184478_18	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0184478_18	COG	COG4722	Phage-related protein YomH	NA
UHGV-0184478_18	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0184478_19	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0184478_19	UniRef90	UniRef90_F9P919	Phage tail tape measure protein, TP901-like family protein	NA
UHGV-0184478_19	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0184478_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0184478_19	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0184478_19	Structural annotation	COG5280	NA	NA
UHGV-0184478_20	PHROG	phrog_709	NA	unknown function
UHGV-0184478_20	UniRef90	UniRef90_C2XXF5	Prophage pi2 protein 40	NA
UHGV-0184478_20	eggNOG-mapper	879305.HMPREF9290_0132	NA	NA
UHGV-0184478_20	Structural annotation	PF11836	NA	NA
UHGV-0184478_21	PHROG	phrog_88	major tail protein	tail
UHGV-0184478_21	UniRef90	UniRef90_A0A7V6Y5X1	Phage tail protein	NA
UHGV-0184478_21	eggNOG-mapper	1123263.AUKY01000046_gene474	phage major tail protein, phi13 family	NA
UHGV-0184478_21	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0184478_21	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0184478_22	PHROG	phrog_78	tail terminator	connector
UHGV-0184478_22	UniRef90	UniRef90_F2BRF4	Prophage pi2 protein 38	NA
UHGV-0184478_22	eggNOG-mapper	1123263.AUKY01000046_gene473	NA	NA
UHGV-0184478_22	Structural annotation	PF20765	NA	NA
UHGV-0184478_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0184478_23	UniRef90	UniRef90_UPI001D60CBC6	HK97 gp10 family phage protein	NA
UHGV-0184478_23	eggNOG-mapper	1123263.AUKY01000046_gene472	NA	NA
UHGV-0184478_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0184478_23	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0184478_24	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0184478_24	UniRef90	UniRef90_UPI001F0C47BA	phage head closure protein	NA
UHGV-0184478_24	eggNOG-mapper	1123263.AUKY01000046_gene471	NA	NA
UHGV-0184478_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0184478_25	PHROG	phrog_5223	neck protein	connector
UHGV-0184478_25	UniRef90	UniRef90_E6MGY0	Putative phage DNA packaging protein	NA
UHGV-0184478_25	eggNOG-mapper	887929.HMP0721_1264	NA	NA
UHGV-0184478_25	Structural annotation	TIGR01560	NA	NA
UHGV-0184478_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0184478_26	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-0184478_26	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0184478_26	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0184478_27	KOfam	K06904	NA	NA
UHGV-0184478_27	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0184478_27	UniRef90	UniRef90_A0A3D1WQ94	HK97 family phage prohead protease	NA
UHGV-0184478_27	eggNOG-mapper	742740.HMPREF9474_04305	Phage prohead protease, HK97 family	NA
UHGV-0184478_27	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0184478_27	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0184478_27	COG	COG3740	Phage head maturation protease	NA
UHGV-0184478_27	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0184478_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0184478_28	UniRef90	UniRef90_A0A3B9G0P9	Portal protein	NA
UHGV-0184478_28	eggNOG-mapper	411471.SUBVAR_05850	Phage portal protein	NA
UHGV-0184478_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0184478_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0184478_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0184478_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0184478_29	UniRef90	UniRef90_A0A3D2WBK2	Terminase large subunit	NA
UHGV-0184478_29	eggNOG-mapper	411471.SUBVAR_05848	large subunit	NA
UHGV-0184478_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0184478_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0184478_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0184478_29	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0184478_30	PHROG	phrog_1066	NA	unknown function
UHGV-0184478_30	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-0184478_30	eggNOG-mapper	742740.HMPREF9474_04308	NA	NA
UHGV-0184478_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0184478_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0184478_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0184478_31	UniRef90	UniRef90_A0A318KRT2	HNH endonuclease	NA
UHGV-0184478_31	eggNOG-mapper	1280689.AUJC01000011_gene1516	endonuclease activity	NA
UHGV-0184478_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0184478_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0184478_32	eggNOG-mapper	679192.HMPREF9013_1311	NA	NA
UHGV-0184478_32	Structural annotation	PF04545, MF_00674, TIGR01636, COG1191	NA	NA
UHGV-0184478_33	Structural annotation	PF09403, NF001644	NA	NA
UHGV-0184478_36	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0184478_36	PHROG	phrog_216	integrase	integration and excision
UHGV-0184478_36	UniRef90	UniRef90_E7MP06	Site-specific recombinase, phage integrase family	NA
UHGV-0184478_36	eggNOG-mapper	1123263.AUKY01000113_gene2072	Integrase	NA
UHGV-0184478_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0184478_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0184478_36	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0184478_38	PHROG	phrog_7711	NA	unknown function
UHGV-0184478_38	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0184478_38	eggNOG-mapper	886882.PPSC2_p0287	NA	NA
UHGV-0184478_41	Structural annotation	PF08962, COG2388	NA	NA
UHGV-0184478_42	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0184478_42	UniRef90	UniRef90_UPI00189C6FDE	methyltransferase	NA
UHGV-0184478_42	eggNOG-mapper	445970.ALIPUT_02675	methyltransferase	NA
UHGV-0184478_42	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0184478_42	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0184478_42	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0184478_42	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0184478_43	eggNOG-mapper	1123263.AUKY01000072_gene2097	NA	NA
UHGV-0184478_43	Structural annotation	PF10571	NA	NA
UHGV-0184478_44	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0184478_44	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0184478_44	UniRef90	UniRef90_A0A890GYF3	Methyltransferase	NA
UHGV-0184478_44	eggNOG-mapper	35241.Q9XJE8_BPTU2	helicase activity	NA
UHGV-0184478_44	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0184478_44	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0184478_44	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0184478_45	PHROG	phrog_7484	NA	unknown function
UHGV-0184478_45	UniRef90	UniRef90_UPI0004261CBB	PcfJ domain-containing protein	NA
UHGV-0184478_45	eggNOG-mapper	1123263.AUKY01000113_gene2079	PcfJ-like protein	NA
UHGV-0184478_45	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0184478_45	Structural annotation	PF14284	NA	NA
UHGV-0184478_46	PHROG	phrog_7445	NA	unknown function
UHGV-0184478_46	UniRef90	UniRef90_UPI000423275A	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0184478_46	eggNOG-mapper	706433.HMPREF9430_01287	PcfK-like protein	NA
UHGV-0184478_46	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0184478_46	Structural annotation	PF14058	NA	NA
UHGV-0184478_47	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0184478_47	UniRef90	UniRef90_A0A412PAT0	NA	NA
UHGV-0184478_47	eggNOG-mapper	1158607.UAU_01720	DnaD domain protein	NA
UHGV-0184478_47	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0184478_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0184478_52	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0184478_53	PHROG	phrog_3202	NA	unknown function
UHGV-0184478_53	UniRef90	UniRef90_UPI000FD76F9E	YjzC family protein	NA
UHGV-0184478_53	eggNOG-mapper	1140001.I571_01148	YjzC-like protein	NA
UHGV-0184478_53	Pfam	PF14168	YjzC-like protein	YjzC
UHGV-0184478_53	Structural annotation	PF14168	NA	NA
UHGV-0184478_55	UniRef90	UniRef90_A0A3A9EHD2	XRE family transcriptional regulator	NA
UHGV-0184478_55	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0184478_55	Structural annotation	PF13560, NF041951, COG1396	NA	NA