UHGV-0184490

Genome information

Genome length 31,932 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9748

Prediction confidence Confident

Genome information
Genome ID	UHGV-0184490
vOTU ID	vOTU-010914
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2737833_a1_ct6419_vs1@Myoviridae__sp._ctPdw1
BioSample	SAMEA2737833
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	Provirus
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9748
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.79
Jumbo phage	No

Genome content
Genome length	31,932 bps
GC content	50.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.69%
Average CDS length	574.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0184490_2	UniRef90	UniRef90_R6J3S0	Peptidase_C39_2 domain-containing protein	NA
UHGV-0184490_2	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0184490_2	Structural annotation	PF11814, NF033920, COG4990	NA	NA
UHGV-0184490_3	PHROG	phrog_263	holin	lysis
UHGV-0184490_3	UniRef90	UniRef90_R6JQI4	Holin SPP1 family	NA
UHGV-0184490_3	eggNOG-mapper	1297617.JPJD01000099_gene2175	SPP1 phage holin	NA
UHGV-0184490_3	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0184490_3	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0184490_3	Structural annotation	PF04688	NA	NA
UHGV-0184490_4	PHROG	phrog_1863	NA	unknown function
UHGV-0184490_4	UniRef90	UniRef90_UPI001E345E1F	hemolysin XhlA family protein	NA
UHGV-0184490_4	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0184490_5	UniRef90	UniRef90_R6J123	ATP synthase B chain	NA
UHGV-0184490_6	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0184490_6	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0184490_6	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0184490_6	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0184490_6	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0184490_6	Structural annotation	PF10651	NA	NA
UHGV-0184490_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0184490_8	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0184490_8	UniRef90	UniRef90_A0A1C5P786	Phage anti-repressor protein	NA
UHGV-0184490_8	eggNOG-mapper	1540257.JQMW01000004_gene443	Phage antirepressor protein KilAC domain	NA
UHGV-0184490_8	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0184490_8	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0184490_8	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0184490_8	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0184490_9	eggNOG-mapper	742738.HMPREF9460_00730	NA	NA
UHGV-0184490_9	Structural annotation	PF13560, COG3423	NA	NA
UHGV-0184490_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0184490_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0184490_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0184490_12	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0184490_12	UniRef90	UniRef90_R6J0A2	Peptidase S74 domain-containing protein	NA
UHGV-0184490_12	eggNOG-mapper	469596.HMPREF9488_01322	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0184490_12	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0184490_12	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0184490_13	PHROG	phrog_1194	NA	unknown function
UHGV-0184490_13	eggNOG-mapper	877414.ATWA01000001_gene917	NA	NA
UHGV-0184490_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0184490_14	eggNOG-mapper	97139.C824_02812	phage tail tape measure protein	NA
UHGV-0184490_14	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0184490_16	Structural annotation	PF11836	NA	NA
UHGV-0184490_17	PHROG	phrog_158	major tail protein	tail
UHGV-0184490_17	UniRef90	UniRef90_A0A358AW13	Phage tail protein	NA
UHGV-0184490_17	eggNOG-mapper	1280689.AUJC01000003_gene972	Phage tail tube protein, TTP	NA
UHGV-0184490_17	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0184490_17	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0184490_18	Structural annotation	PF05657	NA	NA
UHGV-0184490_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0184490_19	UniRef90	UniRef90_R6IVT6	Bacteriophage protein PF04883 family	NA
UHGV-0184490_19	eggNOG-mapper	1499683.CCFF01000014_gene3905	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0184490_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0184490_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0184490_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0184490_23	PHROG	phrog_283	major head protein	head and packaging
UHGV-0184490_23	UniRef90	UniRef90_A0A316RCU2	P22 coat protein	NA
UHGV-0184490_23	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-0184490_23	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0184490_23	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0184490_24	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0184490_24	UniRef90	UniRef90_A0A316RQZ9	Phage capsid protein	NA
UHGV-0184490_24	eggNOG-mapper	1499683.CCFF01000014_gene3909	NA	NA
UHGV-0184490_24	Pfam	PF14265	NA	DUF4355
UHGV-0184490_24	Structural annotation	PF14265	NA	NA
UHGV-0184490_26	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0184490_26	UniRef90	UniRef90_R6J0C1	Phage_Mu_F domain-containing protein	NA
UHGV-0184490_26	eggNOG-mapper	1294142.CINTURNW_1685	Phage Mu protein F like protein	NA
UHGV-0184490_26	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0184490_26	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0184490_26	COG	COG2369	NA	NA
UHGV-0184490_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0184490_27	UniRef90	UniRef90_R6ISE3	Phage portal protein SPP1 family	NA
UHGV-0184490_27	eggNOG-mapper	877414.ATWA01000001_gene907	Phage portal protein, SPP1 family	NA
UHGV-0184490_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0184490_27	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0184490_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0184490_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0184490_28	PHROG	phrog_10250	NA	unknown function
UHGV-0184490_28	UniRef90	UniRef90_R6J366	Phage terminase large subunit PBSX family	NA
UHGV-0184490_28	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0184490_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0184490_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0184490_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0184490_28	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0184490_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0184490_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0184490_29	UniRef90	UniRef90_R6JPZ5	Phage Terminase Small Subunit	NA
UHGV-0184490_29	eggNOG-mapper	1203606.HMPREF1526_00319	Terminase small subunit	NA
UHGV-0184490_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0184490_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0184490_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0184490_31	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-0184490_31	eggNOG-mapper	903814.ELI_1292	NA	NA
UHGV-0184490_32	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0184490_32	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0184490_32	UniRef90	UniRef90_R6ILQ3	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0184490_32	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0184490_32	Pfam	PF00692	dUTPase	dUTPase
UHGV-0184490_32	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0184490_32	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0184490_32	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0184490_33	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0184490_33	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-0184490_33	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0184490_33	Pfam	PF14359	NA	DUF4406
UHGV-0184490_33	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0184490_34	PHROG	phrog_10714	NA	unknown function
UHGV-0184490_34	UniRef90	UniRef90_R5R2P7	DNA polymerase II large subunit	NA
UHGV-0184490_34	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0184490_37	UniRef90	UniRef90_R5GX78	DNA polymerase II large subunit	NA
UHGV-0184490_38	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0184490_38	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0184490_38	UniRef90	UniRef90_R6RCD0	Putative phosphoadenosine phosphosulfate reductase	NA
UHGV-0184490_38	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0184490_38	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0184490_38	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0184490_38	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0184490_40	PHROG	phrog_6721	NA	unknown function
UHGV-0184490_40	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-0184490_40	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0184490_43	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0184490_43	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0184490_43	UniRef90	UniRef90_A0A0L0WED4	Holliday junction resolvase	NA
UHGV-0184490_43	eggNOG-mapper	12348.Q8SDG7_BPLLH	magnesium ion binding	NA
UHGV-0184490_43	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0184490_43	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0184490_45	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0184490_45	eggNOG-mapper	1461580.CCAS010000067_gene4022	DnaD domain protein	NA
UHGV-0184490_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0184490_45	Structural annotation	PF12793, NF033788, COG0640	NA	NA
UHGV-0184490_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0184490_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0184490_46	UniRef90	UniRef90_R6JMM3	Single-stranded DNA-binding protein	NA
UHGV-0184490_46	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0184490_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0184490_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0184490_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0184490_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0184490_46	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0184490_47	PHROG	phrog_7566	NA	unknown function
UHGV-0184490_47	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0184490_47	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0184490_48	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0184490_48	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0184490_48	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-0184490_48	Structural annotation	PF05772	NA	NA
UHGV-0184490_49	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0184490_49	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0184490_49	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0184490_49	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0184490_50	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0184490_50	UniRef90	UniRef90_R6J0Q7	NA	NA
UHGV-0184490_50	eggNOG-mapper	1227360.C176_12583	Siphovirus Gp157	NA
UHGV-0184490_50	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0184490_50	Structural annotation	PF05565, NF002139	NA	NA