UHGV-0184546

Genome information

Genome length 29,956 bps

CDS count 41

Completeness 51.18% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0184546
vOTU ID	vOTU-029460
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594204
BioSample	SAMN09781758
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.18% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.31
Jumbo phage	No

Genome content
Genome length	29,956 bps
GC content	41.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	85.28%
Average CDS length	623.78 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0184546_7	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0184546_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0184546_7	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-0184546_7	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0184546_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0184546_7	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0184546_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0184546_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0184546_8	UniRef90	UniRef90_UPI001D074CCD	helix-turn-helix domain-containing protein	NA
UHGV-0184546_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0184546_8	Structural annotation	PF13443, PF00717, MF_00015, NF041951, TIGR02228, COG3655	NA	NA
UHGV-0184546_9	PHROG	phrog_14030	NA	unknown function
UHGV-0184546_9	UniRef90	UniRef90_A0A417IER1	PG_binding_1 domain-containing protein	NA
UHGV-0184546_9	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0184546_9	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0184546_9	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0184546_9	Structural annotation	PF01471, NF038080, COG3409	NA	NA
UHGV-0184546_10	eggNOG-mapper	1304866.K413DRAFT_0769	NA	NA
UHGV-0184546_11	PHROG	phrog_18725	NA	unknown function
UHGV-0184546_11	eggNOG-mapper	1235800.C819_00473	NA	NA
UHGV-0184546_12	PHROG	phrog_13879	NA	unknown function
UHGV-0184546_12	eggNOG-mapper	1304866.K413DRAFT_0774	NA	NA
UHGV-0184546_12	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0184546_13	PHROG	phrog_1194	NA	unknown function
UHGV-0184546_13	eggNOG-mapper	1298920.KI911353_gene4840	NA	NA
UHGV-0184546_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0184546_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0184546_14	UniRef90	UniRef90_A0A1I0JNI7	Phage-related protein	NA
UHGV-0184546_14	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0184546_14	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0184546_14	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0184546_16	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0184546_16	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0184546_17	Structural annotation	PF05657	NA	NA
UHGV-0184546_18	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0184546_18	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0184546_18	AcrCatalog	cluster_24841	NA	NA
UHGV-0184546_19	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0184546_20	PHROG	phrog_1129	holin	lysis
UHGV-0184546_20	UniRef90	UniRef90_UPI001BBD0ED4	Phage holin family protein	NA
UHGV-0184546_20	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0184546_20	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0184546_20	Structural annotation	PF06946	NA	NA
UHGV-0184546_21	PHROG	phrog_4105	NA	unknown function
UHGV-0184546_21	eggNOG-mapper	97139.C824_05951	NA	NA
UHGV-0184546_22	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0184546_23	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0184546_23	Structural annotation	PF21169	NA	NA
UHGV-0184546_24	PHROG	phrog_29	major head protein	head and packaging
UHGV-0184546_24	UniRef90	UniRef90_UPI001BB87CDE	Major capsid protein	NA
UHGV-0184546_24	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0184546_24	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0184546_24	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0184546_25	eggNOG-mapper	1232453.BAIF02000058_gene1627	NA	NA
UHGV-0184546_26	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0184546_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0184546_27	UniRef90	UniRef90_A0A416G2F2	Phage portal protein	NA
UHGV-0184546_27	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0184546_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0184546_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0184546_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0184546_29	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0184546_29	eggNOG-mapper	469618.FVAG_00790	NA	NA
UHGV-0184546_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0184546_29	Structural annotation	PF07374, NF008895, COG2739	NA	NA
UHGV-0184546_30	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0184546_30	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0184546_30	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0184546_30	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0184546_30	COG	COG5410	NA	NA
UHGV-0184546_30	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0184546_31	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0184546_31	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0184546_31	UniRef90	UniRef90_A0A8D9PG28	tRNA-splicing ligase	NA
UHGV-0184546_31	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-0184546_31	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0184546_31	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0184546_31	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0184546_38	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0184546_38	UniRef90	UniRef90_UPI001BC561E1	Nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0184546_38	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0184546_38	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0184546_38	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0184546_38	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0184546_39	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0184546_39	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0184546_39	UniRef90	UniRef90_UPI001BC68D0E	Phage antirepressor KilAC domain-containing protein	NA
UHGV-0184546_39	eggNOG-mapper	796940.HMPREF9628_02201	BRO family, N-terminal domain	NA
UHGV-0184546_39	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0184546_39	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0184546_39	COG	COG3617	Prophage antirepressor	NA
UHGV-0184546_39	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0184546_40	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0184546_40	Structural annotation	PF16677	NA	NA
UHGV-0184546_41	eggNOG-mapper	1121874.KB892379_gene31	NA	NA
UHGV-0184546_41	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA