UHGV-0184710

Genome information

Genome length 41,295 bps

CDS count 72

Completeness 100.00% (complete)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0184710
vOTU ID	vOTU-046850
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593825
BioSample	SAMN09781755
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.17
Jumbo phage	No

Genome content
Genome length	41,295 bps
GC content	38.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	90.65%
Average CDS length	524.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0184710_3	Structural annotation	PF11195	NA	NA
UHGV-0184710_8	PHROG	phrog_625	NA	unknown function
UHGV-0184710_8	UniRef90	UniRef90_UPI001EEB5C9F	ASCH domain-containing protein	NA
UHGV-0184710_8	Structural annotation	PF12961, MF_00684, COG4043	NA	NA
UHGV-0184710_9	Structural annotation	PF13973, MF_01194, NF010729, COG4873	NA	NA
UHGV-0184710_10	Structural annotation	PF20549, COG1862	NA	NA
UHGV-0184710_11	PHROG	phrog_98	NA	unknown function
UHGV-0184710_11	UniRef90	UniRef90_A0A843GUN3	YopX domain-containing protein	NA
UHGV-0184710_11	eggNOG-mapper	1397699.JNIS01000001_gene2449	YopX protein	NA
UHGV-0184710_11	Pfam	PF09643	YopX protein	YopX
UHGV-0184710_11	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0184710_11	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0184710_15	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0184710_15	UniRef90	UniRef90_A0A843GYH3	RNase H type-1 domain-containing protein	NA
UHGV-0184710_15	Pfam	PF00075	RNase H	RNase_H
UHGV-0184710_15	Structural annotation	PF00075, MF_00042, NF041306, COG0328	NA	NA
UHGV-0184710_17	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0184710_17	UniRef90	UniRef90_UPI001C3AE824	HNH endonuclease	NA
UHGV-0184710_17	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0184710_17	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0184710_21	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0184710_21	PHROG	phrog_7	endolysin	lysis
UHGV-0184710_21	UniRef90	UniRef90_A0A516L728	Lysozyme	NA
UHGV-0184710_21	eggNOG-mapper	880070.Cycma_0230	Phage lysozyme	NA
UHGV-0184710_21	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0184710_21	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0184710_21	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0184710_22	Structural annotation	PF16083, TIGR01594	NA	NA
UHGV-0184710_23	Structural annotation	PF16778	NA	NA
UHGV-0184710_24	PHROG	phrog_523	tail collar fiber protein	tail
UHGV-0184710_24	UniRef90	UniRef90_A0A356FYY9	Collar domain-containing protein	NA
UHGV-0184710_24	eggNOG-mapper	556268.OFAG_02229	tail collar domain protein	NA
UHGV-0184710_24	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0184710_24	COG	COG4675	Phage tail collar domain	NA
UHGV-0184710_24	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0184710_25	PHROG	phrog_587	structural protein	head and packaging
UHGV-0184710_25	UniRef90	UniRef90_A0A843HPL5	NA	NA
UHGV-0184710_25	eggNOG-mapper	1123288.SOV_2c10810	NA	NA
UHGV-0184710_25	Pfam	PF11041	NA	DUF2612
UHGV-0184710_25	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0184710_26	PHROG	phrog_6	baseplate protein	tail
UHGV-0184710_26	UniRef90	UniRef90_A0A843HZX9	Baseplate_J domain-containing protein	NA
UHGV-0184710_26	eggNOG-mapper	160492.XF_1704	homolog of phage Mu protein gp47	NA
UHGV-0184710_26	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0184710_26	COG	COG3299	NA	NA
UHGV-0184710_26	Structural annotation	PF04865, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0184710_27	PHROG	phrog_120	baseplate protein	tail
UHGV-0184710_27	UniRef90	UniRef90_A0A3G7U288	Putative bacteriophage protein	NA
UHGV-0184710_27	eggNOG-mapper	1127515.H9C0N8_9CAUD	NA	NA
UHGV-0184710_28	UniRef90	UniRef90_A0A843HSE6	Gp138_N domain-containing protein	NA
UHGV-0184710_28	eggNOG-mapper	948565.AFFP02000026_gene52	Baseplate assembly protein	NA
UHGV-0184710_28	Pfam	PF18352	NA	Gp138_N
UHGV-0184710_28	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0184710_28	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0184710_29	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0184710_29	UniRef90	UniRef90_A0A514CYK9	RNA nuclease like protein	NA
UHGV-0184710_29	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0184710_30	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0184710_30	UniRef90	UniRef90_A0A388TDP4	Phage-related protein	NA
UHGV-0184710_31	PHROG	phrog_817	tail fiber protein	tail
UHGV-0184710_31	UniRef90	UniRef90_A0A0N9S7F7	Putative structural protein	NA
UHGV-0184710_31	eggNOG-mapper	1304883.KI912532_gene1202	NA	NA
UHGV-0184710_31	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0184710_31	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0184710_35	Structural annotation	PF11681, TIGR02241, COG3498	NA	NA
UHGV-0184710_36	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0184710_36	UniRef90	UniRef90_A0A843HMH9	NA	NA
UHGV-0184710_36	eggNOG-mapper	399742.Ent638_0806	NA	NA
UHGV-0184710_36	Pfam	PF11863	NA	DUF3383
UHGV-0184710_36	Structural annotation	PF11863, COG3497	NA	NA
UHGV-0184710_37	Structural annotation	PF06141	NA	NA
UHGV-0184710_38	PHROG	phrog_939	head protein	head and packaging
UHGV-0184710_38	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0184710_39	PHROG	phrog_222	tail protein	tail
UHGV-0184710_39	UniRef90	UniRef90_A0A484P2U3	Phage-related protein	NA
UHGV-0184710_39	eggNOG-mapper	1217705.F900_02114	NA	NA
UHGV-0184710_40	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0184710_40	UniRef90	UniRef90_A0A843HMT8	NA	NA
UHGV-0184710_40	Pfam	PF13262	NA	DUF4054
UHGV-0184710_42	PHROG	phrog_264	major head protein	head and packaging
UHGV-0184710_42	UniRef90	UniRef90_A0A843HLY0	NA	NA
UHGV-0184710_42	Pfam	PF09950	NA	DUF2184
UHGV-0184710_42	Structural annotation	PF09950, MF_04113, NF041155, COG4834	NA	NA
UHGV-0184710_43	UniRef90	UniRef90_A0A843HQ81	NA	NA
UHGV-0184710_43	Pfam	PF09956	NA	DUF2190
UHGV-0184710_43	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0184710_44	KOfam	K09960	NA	NA
UHGV-0184710_44	PHROG	phrog_2229	head maturation protease	head and packaging
UHGV-0184710_44	UniRef90	UniRef90_A0A843HRG5	NA	NA
UHGV-0184710_44	eggNOG-mapper	1236501.BAJU01000020_gene1993	NA	NA
UHGV-0184710_44	Pfam	PF09979	NA	DUF2213
UHGV-0184710_44	COG	COG3566	NA	NA
UHGV-0184710_44	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0184710_45	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0184710_45	UniRef90	UniRef90_A0A3S0DQD0	Phage_Mu_F domain-containing protein	NA
UHGV-0184710_45	eggNOG-mapper	742740.HMPREF9474_03145	Phage Mu protein F like protein	NA
UHGV-0184710_45	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0184710_45	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0184710_45	COG	COG2369	NA	NA
UHGV-0184710_45	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0184710_46	KOfam	K09961	NA	NA
UHGV-0184710_46	PHROG	phrog_146	portal protein	head and packaging
UHGV-0184710_46	UniRef90	UniRef90_A0A843HMH0	NA	NA
UHGV-0184710_46	eggNOG-mapper	1127515.H9C0L9_9CAUD	NA	NA
UHGV-0184710_46	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0184710_46	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0184710_51	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0184710_51	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0184710_51	UniRef90	UniRef90_A0A843GUW1	PBSX family phage terminase large subunit	NA
UHGV-0184710_51	eggNOG-mapper	2754.EH55_06905	DNA packaging	NA
UHGV-0184710_51	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0184710_51	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0184710_51	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0184710_51	COG	COG1783	Phage terminase large subunit	NA
UHGV-0184710_51	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0184710_52	PHROG	phrog_4102	terminase small subunit	head and packaging
UHGV-0184710_52	Structural annotation	PF07141	NA	NA
UHGV-0184710_53	PHROG	phrog_1569	NA	unknown function
UHGV-0184710_53	UniRef90	UniRef90_A0A843GZ61	Methionine adenosyltransferase domain-containing protein	NA
UHGV-0184710_53	eggNOG-mapper	665950.HMPREF1025_02641	S-adenosylmethionine synthetase, N-terminal domain	NA
UHGV-0184710_53	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-0184710_53	Pfam	PF02773	S-adenosylmethionine synthetase, C-terminal domain	S-AdoMet_synt_C
UHGV-0184710_53	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-0184710_53	Structural annotation	PF01941, MF_00086, TIGR01034, COG0192	NA	NA
UHGV-0184710_55	KOfam	K24451	zim; modification methylase	NA
UHGV-0184710_55	PHROG	phrog_12517	NA	unknown function
UHGV-0184710_55	UniRef90	UniRef90_A0A069D4Y4	Sensor protein FixL	NA
UHGV-0184710_55	eggNOG-mapper	1121097.JCM15093_3233	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0184710_55	PADLOC	MTase_II_00137	Type II methyltransferase	RM
UHGV-0184710_55	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0184710_55	COG	COG0863	DNA modification methylase	NA
UHGV-0184710_55	Structural annotation	PF02195, PF01170, MF_02015, MF_01872, TIGR01177, TIGR04285, COG1041, COG5119	NA	NA
UHGV-0184710_56	eggNOG-mapper	697281.Mahau_0569	NA	NA
UHGV-0184710_56	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0184710_58	PHROG	phrog_4212	NA	unknown function
UHGV-0184710_58	UniRef90	UniRef90_A0A7X3YAB7	UPF0335 protein F4Y03_06655	NA
UHGV-0184710_58	eggNOG-mapper	570952.ATVH01000011_gene24	NA	NA
UHGV-0184710_58	Pfam	PF10073	GapR-like, DNA-binding domain	GapR_DNA-bd
UHGV-0184710_58	COG	COG3750	NA	NA
UHGV-0184710_58	Structural annotation	PF10073, MF_00797, NF010247, COG3750	NA	NA
UHGV-0184710_60	Structural annotation	PF02943, COG4802	NA	NA
UHGV-0184710_61	PHROG	phrog_824	NA	unknown function
UHGV-0184710_61	UniRef90	UniRef90_A0A356FZ71	VRR-NUC domain-containing protein (Fragment)	NA
UHGV-0184710_61	Structural annotation	PF08774	NA	NA
UHGV-0184710_62	PHROG	phrog_96	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0184710_62	UniRef90	UniRef90_A0A843GYS2	NA	NA
UHGV-0184710_62	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0184710_62	Structural annotation	PF16784, NF007281	NA	NA
UHGV-0184710_63	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0184710_63	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0184710_64	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0184710_64	UniRef90	UniRef90_UPI001D06B209	siphovirus Gp157 family protein	NA
UHGV-0184710_64	eggNOG-mapper	365659.smi_0420	Siphovirus Gp157	NA
UHGV-0184710_64	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0184710_64	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0184710_65	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0184710_65	UniRef90	UniRef90_A0A6M1TZ28	ERF family protein	NA
UHGV-0184710_65	eggNOG-mapper	1123276.KB893279_gene2211	Erf family	NA
UHGV-0184710_65	Pfam	PF04404	ERF superfamily	ERF
UHGV-0184710_65	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0184710_67	Pfam	PF08299	Bacterial dnaA protein helix-turn-helix	Bac_DnaA_C
UHGV-0184710_68	UniRef90	UniRef90_T5LPK2	NA	NA
UHGV-0184710_68	eggNOG-mapper	556268.OFAG_02253	NA	NA
UHGV-0184710_68	Pfam	PF13708	NA	DUF4942
UHGV-0184710_68	COG	COG4123	tRNA1(Val) A37 N6-methylase TrmN6	NA
UHGV-0184710_68	Structural annotation	PF13708, PF00398, MF_00607, NF011489, COG2263	NA	NA
UHGV-0184710_69	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0184710_69	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0184710_69	UniRef90	UniRef90_A0A843GU75	Type II methyltransferase	NA
UHGV-0184710_69	eggNOG-mapper	1313421.JHBV01000024_gene4940	DNA methylase	NA
UHGV-0184710_69	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0184710_69	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0184710_69	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0184710_69	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0184710_70	Structural annotation	PF11417	NA	NA