UHGV-0184712

Genome information

Genome length 56,469 bps

CDS count 83

Completeness 100.00% (complete)

geNomad score 0.9748

Prediction confidence Confident

Genome information
Genome ID	UHGV-0184712
vOTU ID	vOTU-046851
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593827
BioSample	SAMN09781755
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9748
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.88
Jumbo phage	No

Genome content
Genome length	56,469 bps
GC content	49.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	83
CDS density	93.26%
Average CDS length	638.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0184712_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0184712_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0184712_1	UniRef90	UniRef90_A0A1I0WH34	Helix-turn-helix domain-containing protein	NA
UHGV-0184712_1	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0184712_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0184712_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0184712_1	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0184712_8	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0184712_8	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0184712_8	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0184712_8	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0184712_9	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0184712_9	UniRef90	UniRef90_UPI001E2B9DFF	host-nuclease inhibitor Gam family protein	NA
UHGV-0184712_9	eggNOG-mapper	1519439.JPJG01000051_gene723	Bacteriophage Mu Gam like protein	NA
UHGV-0184712_9	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0184712_9	Structural annotation	PF07352	NA	NA
UHGV-0184712_10	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0184712_10	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0184712_10	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0184712_10	Structural annotation	PF05772	NA	NA
UHGV-0184712_11	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0184712_11	eggNOG-mapper	945021.TEH_18370	Helix-turn-helix domain	NA
UHGV-0184712_11	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0184712_12	PHROG	phrog_9804	NA	unknown function
UHGV-0184712_12	UniRef90	UniRef90_A0A3D1LDS2	Inhibitor_G39P domain-containing protein	NA
UHGV-0184712_12	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0184712_12	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0184712_12	Structural annotation	PF11417	NA	NA
UHGV-0184712_19	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0184712_19	UniRef90	UniRef90_A0A355KVL2	DNA cytosine methyltransferase	NA
UHGV-0184712_19	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0184712_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0184712_19	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0184712_23	PHROG	phrog_924	NA	unknown function
UHGV-0184712_23	Pfam	PF04448	NA	DUF551
UHGV-0184712_26	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0184712_26	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0184712_26	UniRef90	UniRef90_A0A3D3Y5Q7	dUTP diphosphatase	NA
UHGV-0184712_26	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0184712_26	Pfam	PF00692	dUTPase	dUTPase
UHGV-0184712_26	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0184712_26	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0184712_26	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0184712_28	PHROG	phrog_474	phosphofructokinase	other
UHGV-0184712_28	UniRef90	UniRef90_UPI00103054B4	NA	NA
UHGV-0184712_28	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0184712_28	Pfam	PF19905	NA	DUF6378
UHGV-0184712_28	Structural annotation	PF19905	NA	NA
UHGV-0184712_29	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0184712_29	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0184712_29	eggNOG-mapper	556263.FSEG_00477	NA	NA
UHGV-0184712_29	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0184712_30	Structural annotation	PF18450	NA	NA
UHGV-0184712_31	UniRef90	UniRef90_UPI00156F0E9C	NA	NA
UHGV-0184712_31	eggNOG-mapper	999411.HMPREF1092_00897	NA	NA
UHGV-0184712_31	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0184712_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0184712_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0184712_32	UniRef90	UniRef90_R7EVC4	Single-stranded DNA-binding protein	NA
UHGV-0184712_32	eggNOG-mapper	203119.Cthe_1350	Single-strand binding protein family	NA
UHGV-0184712_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0184712_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0184712_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0184712_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0184712_32	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0184712_36	PHROG	phrog_22978	NA	unknown function
UHGV-0184712_36	UniRef90	UniRef90_A0A1Y4WLF7	PBECR5 domain-containing protein	NA
UHGV-0184712_36	eggNOG-mapper	1321782.HMPREF1986_00356	NA	NA
UHGV-0184712_36	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0184712_39	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0184712_41	PHROG	phrog_2172	NA	unknown function
UHGV-0184712_41	UniRef90	UniRef90_W1I4H7	Uncultured bacterium plasmid pRGI00071	NA
UHGV-0184712_41	eggNOG-mapper	1410612.JNKO01000012_gene574	Initiator Replication protein	NA
UHGV-0184712_41	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0184712_41	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0184712_41	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0184712_41	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0184712_42	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0184712_42	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0184712_42	UniRef90	UniRef90_A0A7X7EJJ7	Recombinase family protein	NA
UHGV-0184712_42	eggNOG-mapper	877420.ATVW01000008_gene521	Resolvase, N terminal domain	NA
UHGV-0184712_42	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0184712_42	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0184712_42	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0184712_44	Structural annotation	PF12510	NA	NA
UHGV-0184712_45	PHROG	phrog_20016	NA	unknown function
UHGV-0184712_45	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0184712_45	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0184712_45	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0184712_46	PHROG	phrog_16490	NA	unknown function
UHGV-0184712_46	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0184712_47	PHROG	phrog_22984	NA	unknown function
UHGV-0184712_48	PHROG	phrog_21718	NA	unknown function
UHGV-0184712_48	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0184712_49	PHROG	phrog_3754	NA	unknown function
UHGV-0184712_49	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0184712_51	eggNOG-mapper	693746.OBV_19020	NA	NA
UHGV-0184712_53	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0184712_53	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0184712_53	UniRef90	UniRef90_A0A353WR18	Metalloendopeptidase	NA
UHGV-0184712_53	eggNOG-mapper	1449126.JQKL01000043_gene1877	Peptidase family M23	NA
UHGV-0184712_53	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0184712_53	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0184712_53	Structural annotation	PF01551, PF09992, NF040883, COG0739, COG3698	NA	NA
UHGV-0184712_54	PHROG	phrog_4105	NA	unknown function
UHGV-0184712_54	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-0184712_56	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0184712_56	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0184712_57	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0184712_57	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0184712_58	eggNOG-mapper	931626.Awo_c11420	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0184712_58	Pfam	PF19789	NA	DUF6273
UHGV-0184712_58	COG	COG3209	NA	NA
UHGV-0184712_58	Structural annotation	PF19789	NA	NA
UHGV-0184712_59	PHROG	phrog_13589	NA	unknown function
UHGV-0184712_59	eggNOG-mapper	1298920.KI911353_gene4836	ATPase involved in DNA repair	NA
UHGV-0184712_59	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0184712_60	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0184712_60	COG	COG4926	Phage-related protein	NA
UHGV-0184712_60	Structural annotation	PF10651	NA	NA
UHGV-0184712_63	eggNOG-mapper	1449126.JQKL01000002_gene1688	NA	NA
UHGV-0184712_63	Structural annotation	PF11134, NF038128, COG5276	NA	NA
UHGV-0184712_64	Structural annotation	PF20387	NA	NA
UHGV-0184712_66	PHROG	phrog_14242	major head protein	head and packaging
UHGV-0184712_66	UniRef90	UniRef90_A0A3D2CI53	Phage major capsid protein	NA
UHGV-0184712_66	eggNOG-mapper	935948.KE386495_gene2267	NA	NA
UHGV-0184712_66	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-0184712_66	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-0184712_68	PHROG	phrog_156	portal protein	head and packaging
UHGV-0184712_68	eggNOG-mapper	588581.Cpap_1526	NA	NA
UHGV-0184712_68	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0184712_71	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0184712_71	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0184712_71	UniRef90	UniRef90_UPI001C30E6F9	PBSX family phage terminase large subunit	NA
UHGV-0184712_71	eggNOG-mapper	696281.Desru_1088	Phage terminase large subunit	NA
UHGV-0184712_71	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0184712_71	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0184712_71	COG	COG1783	Phage terminase large subunit	NA
UHGV-0184712_71	Structural annotation	PF04466, PF20454, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0184712_72	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0184712_72	UniRef90	UniRef90_UPI001D02F64C	DNA-packaging protein	NA
UHGV-0184712_72	Structural annotation	PF16677	NA	NA
UHGV-0184712_73	Structural annotation	PF02185, NF012003	NA	NA
UHGV-0184712_76	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0184712_78	PHROG	phrog_10678	NA	unknown function
UHGV-0184712_79	PHROG	phrog_3292	NA	unknown function
UHGV-0184712_79	UniRef90	UniRef90_A0A5B0C3F0	KTSC domain-containing protein	NA
UHGV-0184712_79	eggNOG-mapper	1117319.PSPO_09654	KTSC domain	NA
UHGV-0184712_79	Pfam	PF13619	KTSC domain	KTSC
UHGV-0184712_79	COG	COG1190	Lysyl-tRNA synthetase (class II)	NA
UHGV-0184712_79	Structural annotation	PF13619	NA	NA
UHGV-0184712_82	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0184712_82	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0184712_82	UniRef90	UniRef90_Q7M7C4	HTH cro/C1-type domain-containing protein	NA
UHGV-0184712_82	eggNOG-mapper	1346.DQ08_00565	sequence-specific DNA binding	NA
UHGV-0184712_82	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0184712_82	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0184712_82	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA