UHGV-0184865

Genome information

Genome length 27,600 bps

CDS count 40

Completeness 74.63% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0184865
vOTU ID	vOTU-029489
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596666
BioSample	SAMN09781770
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.69
Jumbo phage	No

Genome content
Genome length	27,600 bps
GC content	57.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	92.39%
Average CDS length	639.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0184865_1	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0184865_1	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-0184865_1	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0184865_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0184865_1	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0184865_1	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0184865_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0184865_1	Structural annotation	PF03354, PF20441, PF05119, MF_04146, TIGR01547, TIGR01558, COG4626, COG3747	NA	NA
UHGV-0184865_2	PHROG	phrog_21498	NA	unknown function
UHGV-0184865_2	eggNOG-mapper	1121866.AUGK01000014_gene2036	DNA binding	NA
UHGV-0184865_2	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0184865_2	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0184865_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0184865_3	UniRef90	UniRef90_A0A3D1VH02	Phage portal protein	NA
UHGV-0184865_3	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-0184865_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0184865_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0184865_3	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0184865_4	KOfam	K06904	NA	NA
UHGV-0184865_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0184865_4	UniRef90	UniRef90_A0A3D1VA27	HK97 family phage prohead protease	NA
UHGV-0184865_4	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-0184865_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0184865_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0184865_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0184865_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0184865_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0184865_5	UniRef90	UniRef90_A0A2V2FJ37	Phage major capsid protein	NA
UHGV-0184865_5	eggNOG-mapper	913865.DOT_5633	phage major capsid protein, HK97 family	NA
UHGV-0184865_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0184865_5	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0184865_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0184865_5	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0184865_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0184865_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0184865_7	PHROG	phrog_19734	NA	unknown function
UHGV-0184865_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0184865_8	Structural annotation	PF11367, MF_00632	NA	NA
UHGV-0184865_9	Structural annotation	TIGR01725	NA	NA
UHGV-0184865_10	PHROG	phrog_88	major tail protein	tail
UHGV-0184865_10	UniRef90	UniRef90_A0A7G9G8N6	S-l_SbsC_C domain-containing protein	NA
UHGV-0184865_10	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0184865_10	COG	COG5492	NA	NA
UHGV-0184865_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0184865_11	Structural annotation	PF11836	NA	NA
UHGV-0184865_12	PHROG	phrog_13338	NA	unknown function
UHGV-0184865_12	UniRef90	UniRef90_UPI00098F054B	phage tail protein	NA
UHGV-0184865_12	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-0184865_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0184865_12	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0184865_13	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0184865_13	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0184865_13	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0184865_13	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0184865_14	PHROG	phrog_26795	NA	unknown function
UHGV-0184865_14	eggNOG-mapper	1460635.JCM19038_2827	NA	NA
UHGV-0184865_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0184865_15	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0184865_16	Structural annotation	PF08481, NF033814, COG5456	NA	NA
UHGV-0184865_17	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0184865_18	PHROG	phrog_13589	NA	unknown function
UHGV-0184865_18	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0184865_19	eggNOG-mapper	428125.CLOLEP_01435	NA	NA
UHGV-0184865_20	PHROG	phrog_37900	NA	unknown function
UHGV-0184865_20	UniRef90	UniRef90_UPI00051B4A1C	NA	NA
UHGV-0184865_20	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0184865_20	Pfam	PF19789	NA	DUF6273
UHGV-0184865_20	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0184865_20	Structural annotation	PF19789	NA	NA
UHGV-0184865_21	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0184865_21	UniRef90	UniRef90_A0A350TI55	NA	NA
UHGV-0184865_21	eggNOG-mapper	1121334.KB911071_gene1970	NA	NA
UHGV-0184865_21	Pfam	PF19789	NA	DUF6273
UHGV-0184865_21	Structural annotation	PF19789	NA	NA
UHGV-0184865_22	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-0184865_23	PHROG	phrog_937	hemolysin	other
UHGV-0184865_23	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0184865_25	PHROG	phrog_13256	NA	unknown function
UHGV-0184865_25	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-0184865_26	UniRef90	UniRef90_A0A358M2Y7	PG_binding_1 domain-containing protein	NA
UHGV-0184865_26	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0184865_26	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0184865_26	Structural annotation	NF033743	NA	NA
UHGV-0184865_27	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0184865_29	PHROG	phrog_16490	NA	unknown function
UHGV-0184865_29	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0184865_30	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0184865_31	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0184865_31	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0184865_32	KOfam	K14059	int; integrase	NA
UHGV-0184865_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0184865_32	UniRef90	UniRef90_A0A212JT52	Putative Integrase family protein	NA
UHGV-0184865_32	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0184865_32	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0184865_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0184865_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0184865_32	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0184865_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0184865_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0184865_33	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0184865_34	UniRef90	UniRef90_A0A0U3ELM1	PBECR3 domain-containing protein	NA
UHGV-0184865_34	eggNOG-mapper	748727.CLJU_c39230	NA	NA
UHGV-0184865_34	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0184865_34	Structural annotation	PF18812, TIGR00053, COG2929	NA	NA
UHGV-0184865_35	KOfam	K01972	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	NA
UHGV-0184865_35	PHROG	phrog_3989	NA	unknown function
UHGV-0184865_35	UniRef90	UniRef90_R5ENY0	BRCT domain-containing protein	NA
UHGV-0184865_35	eggNOG-mapper	755731.Clo1100_2167	twin BRCT domain	NA
UHGV-0184865_35	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0184865_35	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0184865_35	Structural annotation	PF00533, NF004844	NA	NA
UHGV-0184865_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0184865_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0184865_36	UniRef90	UniRef90_A0A7X8ZBJ1	Helix-turn-helix transcriptional regulator	NA
UHGV-0184865_36	eggNOG-mapper	203119.Cthe_2460	Helix-turn-helix XRE-family like proteins	NA
UHGV-0184865_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0184865_36	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0184865_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0184865_37	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0184865_37	UniRef90	UniRef90_A0A2N2CPU2	XRE family transcriptional regulator	NA
UHGV-0184865_37	eggNOG-mapper	1392502.JNIO01000002_gene278	sequence-specific DNA binding	NA
UHGV-0184865_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0184865_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0184865_37	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0184865_39	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0184865_39	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0184865_40	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0184865_40	UniRef90	UniRef90_A0A1Y4KU10	HTH cro/C1-type domain-containing protein	NA
UHGV-0184865_40	eggNOG-mapper	246194.CHY_1694	Helix-turn-helix XRE-family like proteins	NA
UHGV-0184865_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0184865_40	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA