UHGV-0185032

Genome information

Genome length 36,174 bps

CDS count 49

Completeness 95.79% (high-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0185032
vOTU ID	vOTU-074845
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595284
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.79% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.48
Jumbo phage	No

Genome content
Genome length	36,174 bps
GC content	44.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.08%
Average CDS length	682.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0185032_1	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0185032_1	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0185032_1	UniRef90	UniRef90_A0A3D2TY04	Phage portal protein	NA
UHGV-0185032_1	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0185032_1	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0185032_1	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0185032_1	COG	COG1783	Phage terminase large subunit	NA
UHGV-0185032_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0185032_2	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0185032_2	UniRef90	UniRef90_A0A3D2TUW4	Terminase	NA
UHGV-0185032_2	eggNOG-mapper	552396.HMPREF0863_01628	Phage terminase, large subunit, PBSX family	NA
UHGV-0185032_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0185032_2	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0185032_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0185032_3	UniRef90	UniRef90_A0A3D2TWD8	Capsid protein	NA
UHGV-0185032_3	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0185032_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0185032_4	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0185032_4	UniRef90	UniRef90_A0A3D5WGG7	Minor capsid protein	NA
UHGV-0185032_4	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0185032_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0185032_4	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0185032_4	Structural annotation	PF06152, PF03496, NF041404	NA	NA
UHGV-0185032_7	PHROG	phrog_3675	NA	unknown function
UHGV-0185032_7	UniRef90	UniRef90_A0A3D2TWU9	Dihydrolipoyl dehydrogenase	NA
UHGV-0185032_7	eggNOG-mapper	585501.HMPREF6123_0838	YjcQ protein	NA
UHGV-0185032_7	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0185032_7	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0185032_8	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0185032_8	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0185032_9	PHROG	phrog_422	major head protein	head and packaging
UHGV-0185032_9	UniRef90	UniRef90_A0A414EG86	Phage capsid protein	NA
UHGV-0185032_9	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0185032_9	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0185032_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0185032_10	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0185032_11	PHROG	phrog_8710	NA	unknown function
UHGV-0185032_11	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0185032_11	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0185032_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0185032_12	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-0185032_13	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0185032_13	UniRef90	UniRef90_UPI00164BAA81	minor capsid protein	NA
UHGV-0185032_13	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0185032_13	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0185032_13	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0185032_14	PHROG	phrog_820	major tail protein	tail
UHGV-0185032_14	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0185032_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0185032_15	PHROG	phrog_8300	NA	unknown function
UHGV-0185032_15	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0185032_15	Structural annotation	PF06854	NA	NA
UHGV-0185032_16	PHROG	phrog_8355	NA	unknown function
UHGV-0185032_16	UniRef90	UniRef90_UPI001D0684E3	bacteriophage Gp15 family protein	NA
UHGV-0185032_16	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0185032_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0185032_16	Structural annotation	PF06854	NA	NA
UHGV-0185032_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0185032_17	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0185032_17	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-0185032_17	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0185032_17	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0185032_18	PHROG	phrog_1194	NA	unknown function
UHGV-0185032_18	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0185032_18	Pfam	PF20458	NA	DUF6711
UHGV-0185032_18	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-0185032_19	PHROG	phrog_18190	NA	unknown function
UHGV-0185032_19	UniRef90	UniRef90_A0A3A8WLR6	Peptidase S74 domain-containing protein	NA
UHGV-0185032_19	eggNOG-mapper	742733.HMPREF9469_01807	NA	NA
UHGV-0185032_19	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0185032_21	PHROG	phrog_19291	NA	unknown function
UHGV-0185032_21	eggNOG-mapper	397290.C810_01269	NA	NA
UHGV-0185032_21	Structural annotation	PF02191, COG3823	NA	NA
UHGV-0185032_22	PHROG	phrog_199	holin	lysis
UHGV-0185032_22	UniRef90	UniRef90_R6LS59	Toxin secretion/phage lysis holin	NA
UHGV-0185032_22	eggNOG-mapper	357809.Cphy_0798	Bacteriophage holin family	NA
UHGV-0185032_22	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0185032_22	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0185032_22	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0185032_22	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0185032_23	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0185032_23	PHROG	phrog_435	endolysin	lysis
UHGV-0185032_23	UniRef90	UniRef90_A0A1Q6LL73	MurNAc-LAA domain-containing protein	NA
UHGV-0185032_23	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0185032_23	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0185032_23	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0185032_23	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0185032_24	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0185032_24	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0185032_24	UniRef90	UniRef90_UPI001BC64A01	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0185032_24	eggNOG-mapper	1235792.C808_05257	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0185032_24	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0185032_24	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0185032_24	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0185032_25	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0185032_25	PHROG	phrog_95	integrase	integration and excision
UHGV-0185032_25	UniRef90	UniRef90_A0A3A8YWS1	Recombinase family protein	NA
UHGV-0185032_25	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0185032_25	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0185032_25	Pfam	PF07508	Recombinase	Recombinase
UHGV-0185032_25	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0185032_25	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0185032_25	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0185032_27	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0185032_27	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0185032_27	UniRef90	UniRef90_A0A3D2TSD7	Endonuclease	NA
UHGV-0185032_27	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0185032_27	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0185032_27	COG	COG4748	NA	NA
UHGV-0185032_27	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0185032_28	PHROG	phrog_20886	NA	unknown function
UHGV-0185032_28	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0185032_28	eggNOG-mapper	1235798.C817_00619	NA	NA
UHGV-0185032_28	Structural annotation	PF06114	NA	NA
UHGV-0185032_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0185032_29	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0185032_29	UniRef90	UniRef90_A0A416AFE6	XRE family transcriptional regulator	NA
UHGV-0185032_29	eggNOG-mapper	1321782.HMPREF1986_02243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0185032_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0185032_29	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0185032_29	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0185032_30	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0185032_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0185032_30	UniRef90	UniRef90_A0A1C5S0Q3	Transcriptional regulator, y4mF family	NA
UHGV-0185032_30	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0185032_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0185032_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0185032_30	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0185032_32	PHROG	phrog_585	NA	unknown function
UHGV-0185032_32	UniRef90	UniRef90_UPI001654CF6A	NA	NA
UHGV-0185032_32	eggNOG-mapper	1235798.C817_04760	NA	NA
UHGV-0185032_32	Pfam	PF10711	NA	DUF2513
UHGV-0185032_32	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0185032_33	PHROG	phrog_4621	NA	unknown function
UHGV-0185032_33	eggNOG-mapper	1415774.U728_1126	NA	NA
UHGV-0185032_37	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0185032_37	eggNOG-mapper	1415774.U728_484	NA	NA
UHGV-0185032_37	Structural annotation	PF00075, PF21578, MF_00042, NF001236, COG0328	NA	NA
UHGV-0185032_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0185032_38	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0185032_38	UniRef90	UniRef90_A0A416HJH0	ParB domain-containing protein	NA
UHGV-0185032_38	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-0185032_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0185032_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0185032_38	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0185032_39	UniRef90	UniRef90_A0A3A8WMX4	HNH endonuclease	NA
UHGV-0185032_39	eggNOG-mapper	457396.CSBG_00170	HNH nucleases	NA
UHGV-0185032_39	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0185032_39	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0185032_39	Structural annotation	COG5126	NA	NA
UHGV-0185032_41	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0185032_41	PHROG	phrog_200	lipoprotein	other
UHGV-0185032_41	UniRef90	UniRef90_A0A3R6QAY9	Prohibitin family protein	NA
UHGV-0185032_41	eggNOG-mapper	33035.JPJF01000066_gene3563	prohibitin homologues	NA
UHGV-0185032_41	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0185032_41	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0185032_41	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0185032_42	UniRef90	UniRef90_A0A3R6NTZ8	NA	NA
UHGV-0185032_42	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0185032_43	PHROG	phrog_874	NA	unknown function
UHGV-0185032_43	UniRef90	UniRef90_UPI0018F57B3A	ASCH domain-containing protein	NA
UHGV-0185032_43	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0185032_43	Structural annotation	PF04266, MF_00684, NF003443, COG4043	NA	NA
UHGV-0185032_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0185032_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0185032_45	UniRef90	UniRef90_A0A3R6N219	Single-stranded DNA-binding protein	NA
UHGV-0185032_45	eggNOG-mapper	742765.HMPREF9457_02531	Single-strand binding protein family	NA
UHGV-0185032_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0185032_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0185032_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0185032_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0185032_45	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0185032_49	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0185032_49	UniRef90	UniRef90_A0A416ZS25	NA	NA
UHGV-0185032_49	eggNOG-mapper	1321786.HMPREF1992_00991	sigma factor activity	NA
UHGV-0185032_49	Pfam	PF07374	NA	DUF1492
UHGV-0185032_49	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0185032_49	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA