UHGV-0185076

Genome information

Genome length 39,063 bps

CDS count 70

Completeness 100.00% (complete)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0185076
vOTU ID	vOTU-046870
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594154
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.97
Jumbo phage	No

Genome content
Genome length	39,063 bps
GC content	51.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	90.44%
Average CDS length	508.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0185076_2	PHROG	phrog_27044	NA	unknown function
UHGV-0185076_2	UniRef90	UniRef90_A0A173WVY7	Queuosine ECF transporter S component QueT	NA
UHGV-0185076_2	eggNOG-mapper	665956.HMPREF1032_03074	QueT transporter	NA
UHGV-0185076_2	Pfam	PF06177	QueT transporter	QueT
UHGV-0185076_2	COG	COG4708	ECF-type transporter of queuosine precursor, membrane (S) component	NA
UHGV-0185076_2	Structural annotation	PF06177, MF_01572, TIGR04522, COG4708	NA	NA
UHGV-0185076_3	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0185076_3	UniRef90	UniRef90_R6N9F6	Mycobacteriophage GP2 protein	NA
UHGV-0185076_3	eggNOG-mapper	665956.HMPREF1032_03076	NA	NA
UHGV-0185076_3	Structural annotation	PF00290, MF_01634, TIGR00432, COG0269	NA	NA
UHGV-0185076_4	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0185076_4	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0185076_4	UniRef90	UniRef90_A0A810PZK9	ParB domain-containing protein	NA
UHGV-0185076_4	eggNOG-mapper	1211035.CD30_13045	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0185076_4	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0185076_4	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0185076_4	COG	COG0863	DNA modification methylase	NA
UHGV-0185076_4	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0185076_5	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0185076_9	PHROG	phrog_474	phosphofructokinase	other
UHGV-0185076_9	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-0185076_9	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0185076_9	Pfam	PF19905	NA	DUF6378
UHGV-0185076_9	Structural annotation	PF19905	NA	NA
UHGV-0185076_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0185076_11	UniRef90	UniRef90_A0A316LMN1	XRE family transcriptional regulator	NA
UHGV-0185076_11	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0185076_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0185076_11	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0185076_12	Structural annotation	PF21291	NA	NA
UHGV-0185076_13	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0185076_13	UniRef90	UniRef90_UPI001C10203E	NA	NA
UHGV-0185076_13	eggNOG-mapper	498761.HM1_0053	HNH endonuclease	NA
UHGV-0185076_13	Pfam	PF19808	NA	DUF6291
UHGV-0185076_13	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0185076_13	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0185076_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0185076_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0185076_14	UniRef90	UniRef90_UPI001C02B0E9	single-stranded DNA-binding protein	NA
UHGV-0185076_14	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0185076_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0185076_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0185076_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0185076_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0185076_14	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0185076_15	UniRef90	UniRef90_UPI001F4CC127	helix-turn-helix domain-containing protein	NA
UHGV-0185076_15	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0185076_15	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0185076_15	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0185076_16	PHROG	phrog_2600	NA	unknown function
UHGV-0185076_16	eggNOG-mapper	1415774.U728_3767	NA	NA
UHGV-0185076_17	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0185076_17	UniRef90	UniRef90_A0A3D3Y4P7	HNH domain-containing protein	NA
UHGV-0185076_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0185076_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0185076_18	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0185076_18	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0185076_18	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0185076_18	Structural annotation	PF05772	NA	NA
UHGV-0185076_19	PHROG	phrog_14970	NA	unknown function
UHGV-0185076_19	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0185076_19	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0185076_19	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0185076_19	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0185076_20	Structural annotation	PF00412	NA	NA
UHGV-0185076_22	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0185076_23	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0185076_23	UniRef90	UniRef90_A0A374BFJ7	DNA cytosine methyltransferase	NA
UHGV-0185076_23	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0185076_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0185076_23	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0185076_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0185076_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0185076_29	UniRef90	UniRef90_UPI001957F096	helix-turn-helix domain-containing protein	NA
UHGV-0185076_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0185076_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0185076_29	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0185076_31	PHROG	phrog_9418	NA	unknown function
UHGV-0185076_31	eggNOG-mapper	411463.EUBVEN_01989	NA	NA
UHGV-0185076_31	Structural annotation	PF10233	NA	NA
UHGV-0185076_32	Structural annotation	PF13560, TIGR03070, COG3655	NA	NA
UHGV-0185076_33	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0185076_33	PHROG	phrog_95	integrase	integration and excision
UHGV-0185076_33	UniRef90	UniRef90_A0A3A9ED02	Site-specific recombinase	NA
UHGV-0185076_33	eggNOG-mapper	1378168.N510_03180	resolvase	NA
UHGV-0185076_33	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0185076_33	Pfam	PF07508	Recombinase	Recombinase
UHGV-0185076_33	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0185076_33	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0185076_33	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0185076_34	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0185076_35	Structural annotation	PF12510	NA	NA
UHGV-0185076_36	PHROG	phrog_20016	NA	unknown function
UHGV-0185076_36	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0185076_36	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0185076_36	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0185076_37	PHROG	phrog_16490	NA	unknown function
UHGV-0185076_37	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0185076_38	PHROG	phrog_22984	NA	unknown function
UHGV-0185076_42	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0185076_42	PHROG	phrog_2104	NA	unknown function
UHGV-0185076_42	UniRef90	UniRef90_A0A355NLF8	DNA-binding protein	NA
UHGV-0185076_42	eggNOG-mapper	319225.Plut_1042	sequence-specific DNA binding	NA
UHGV-0185076_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0185076_42	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0185076_43	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0185076_43	UniRef90	UniRef90_A0A2G2M2K8	AP2 domain-containing protein	NA
UHGV-0185076_43	eggNOG-mapper	478749.BRYFOR_05054	AP2 domain protein	NA
UHGV-0185076_43	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0185076_44	eggNOG-mapper	1304866.K413DRAFT_4686	NA	NA
UHGV-0185076_45	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0185076_45	PHROG	phrog_2104	NA	unknown function
UHGV-0185076_45	UniRef90	UniRef90_A0A373MZ63	Helix-turn-helix domain-containing protein	NA
UHGV-0185076_45	eggNOG-mapper	1410631.JHWZ01000002_gene1263	sequence-specific DNA binding	NA
UHGV-0185076_45	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0185076_45	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0185076_46	UniRef90	UniRef90_A0A350H2J1	HTH luxR-type domain-containing protein	NA
UHGV-0185076_46	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0185076_46	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0185076_47	KOfam	K07273	acm; lysozyme	NA
UHGV-0185076_47	PHROG	phrog_291	endolysin	lysis
UHGV-0185076_47	UniRef90	UniRef90_A0A6S6X8V6	Putative Lysozyme	NA
UHGV-0185076_47	eggNOG-mapper	1415775.U729_2621	Glycosyl hydrolases family 25	NA
UHGV-0185076_47	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0185076_47	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0185076_47	Pfam	PF19085	Choline-binding repeat	Choline_bind_2
UHGV-0185076_47	COG	COG3103	NA	NA
UHGV-0185076_47	Structural annotation	PF01183, PF19127, TIGR04035, TIGR04303, COG3757	NA	NA
UHGV-0185076_48	Structural annotation	PF12802	NA	NA
UHGV-0185076_49	PHROG	phrog_1129	holin	lysis
UHGV-0185076_49	UniRef90	UniRef90_R6H6W8	Putative holin	NA
UHGV-0185076_49	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0185076_49	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0185076_49	Structural annotation	PF06946	NA	NA
UHGV-0185076_50	PHROG	phrog_1863	NA	unknown function
UHGV-0185076_50	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0185076_51	PHROG	phrog_2310	NA	unknown function
UHGV-0185076_54	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0185076_54	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0185076_54	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0185076_54	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0185076_54	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0185076_54	COG	COG4926	Phage-related protein	NA
UHGV-0185076_54	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0185076_55	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0185076_55	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0185076_55	eggNOG-mapper	1582149.A0A0A8WHP7_9CAUD	Phage tail protein	NA
UHGV-0185076_55	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0185076_56	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0185076_56	eggNOG-mapper	521003.COLINT_02352	nuclear chromosome segregation	NA
UHGV-0185076_56	COG	COG5412	Phage-related protein	NA
UHGV-0185076_56	Structural annotation	PF20155, COG5281	NA	NA
UHGV-0185076_59	PHROG	phrog_885	major tail protein	tail
UHGV-0185076_59	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0185076_59	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0185076_59	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0185076_60	PHROG	phrog_17405	head protein	head and packaging
UHGV-0185076_60	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0185076_60	Structural annotation	PF11367	NA	NA
UHGV-0185076_61	PHROG	phrog_17977	NA	unknown function
UHGV-0185076_61	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0185076_61	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0185076_63	PHROG	phrog_544	major head protein	head and packaging
UHGV-0185076_63	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0185076_63	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0185076_63	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0185076_63	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0185076_64	Structural annotation	PF06810	NA	NA
UHGV-0185076_65	Structural annotation	PF18152	NA	NA
UHGV-0185076_66	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0185076_66	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-0185076_66	eggNOG-mapper	1443125.Z962_05620	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0185076_66	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0185076_66	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0185076_66	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0185076_67	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0185076_67	UniRef90	UniRef90_A0A1C7FSE6	Phage_Mu_F domain-containing protein	NA
UHGV-0185076_67	eggNOG-mapper	1118063.I7J6P6_9CAUD	Phage Mu protein F like protein	NA
UHGV-0185076_67	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0185076_67	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0185076_68	PHROG	phrog_64	portal protein	head and packaging
UHGV-0185076_68	UniRef90	UniRef90_UPI001AA0B7FF	phage portal protein	NA
UHGV-0185076_68	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0185076_68	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0185076_69	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0185076_69	PHROG	phrog_10250	NA	unknown function
UHGV-0185076_69	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0185076_69	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0185076_69	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0185076_69	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0185076_69	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0185076_69	COG	COG1783	Phage terminase large subunit	NA
UHGV-0185076_69	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA