UHGV-0185077

Genome information

Genome length 38,453 bps

CDS count 60

Completeness 100.00% (complete)

geNomad score 0.9735

Prediction confidence Confident

Genome information
Genome ID	UHGV-0185077
vOTU ID	vOTU-046871
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594155
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9735
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.62
Jumbo phage	No

Genome content
Genome length	38,453 bps
GC content	55.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	89.12%
Average CDS length	574.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0185077_2	KOfam	K14059	int; integrase	NA
UHGV-0185077_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0185077_2	UniRef90	UniRef90_UPI0019572115	tyrosine-type recombinase/integrase	NA
UHGV-0185077_2	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0185077_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0185077_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0185077_2	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0185077_3	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0185077_3	PHROG	phrog_6523	endolysin	lysis
UHGV-0185077_3	UniRef90	UniRef90_A0A8J6J9A0	M15 family metallopeptidase	NA
UHGV-0185077_3	eggNOG-mapper	1519439.JPJG01000023_gene536	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0185077_3	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0185077_3	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0185077_4	PHROG	phrog_6918	holin	lysis
UHGV-0185077_4	UniRef90	UniRef90_G9YP36	Phage holin, LL-H family	NA
UHGV-0185077_4	eggNOG-mapper	997350.HMPREF9129_1625	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0185077_4	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0185077_4	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0185077_6	PHROG	phrog_4105	NA	unknown function
UHGV-0185077_7	UniRef90	UniRef90_A0A1Y3X1Z8	Sigma70_r4 domain-containing protein	NA
UHGV-0185077_7	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0185077_7	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0185077_7	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0185077_7	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0185077_7	Structural annotation	PF00196, PF04545, NF006146, NF003257, COG2771	NA	NA
UHGV-0185077_11	PHROG	phrog_18725	NA	unknown function
UHGV-0185077_11	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0185077_12	PHROG	phrog_13879	NA	unknown function
UHGV-0185077_12	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0185077_12	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0185077_13	PHROG	phrog_1194	NA	unknown function
UHGV-0185077_13	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0185077_13	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0185077_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0185077_14	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0185077_14	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0185077_14	COG	COG1511	NA	NA
UHGV-0185077_14	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0185077_15	PHROG	phrog_706	NA	unknown function
UHGV-0185077_15	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0185077_15	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0185077_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0185077_15	Structural annotation	PF06854	NA	NA
UHGV-0185077_16	PHROG	phrog_11299	NA	unknown function
UHGV-0185077_16	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0185077_16	Structural annotation	PF10666	NA	NA
UHGV-0185077_17	PHROG	phrog_3099	NA	unknown function
UHGV-0185077_17	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0185077_17	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0185077_18	PHROG	phrog_3266	tail completion	connector
UHGV-0185077_18	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0185077_18	Structural annotation	PF08873	NA	NA
UHGV-0185077_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0185077_19	UniRef90	UniRef90_UPI00164EC49A	minor capsid protein	NA
UHGV-0185077_19	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0185077_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0185077_19	Structural annotation	PF11114	NA	NA
UHGV-0185077_20	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-0185077_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0185077_21	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0185077_23	UniRef90	UniRef90_UPI00164D7D74	C2H2-type zinc finger protein	NA
UHGV-0185077_23	Pfam	PF00096	Zinc finger, C2H2 type	zf-C2H2
UHGV-0185077_24	PHROG	phrog_422	major head protein	head and packaging
UHGV-0185077_24	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0185077_24	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0185077_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0185077_25	UniRef90	UniRef90_UPI00164D9F94	phage scaffolding protein	NA
UHGV-0185077_25	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0185077_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0185077_25	Structural annotation	PF06810	NA	NA
UHGV-0185077_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0185077_26	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0185077_26	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0185077_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0185077_26	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0185077_26	COG	COG2369	NA	NA
UHGV-0185077_26	Structural annotation	PF06152	NA	NA
UHGV-0185077_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0185077_27	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-0185077_27	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-0185077_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0185077_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0185077_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0185077_29	UniRef90	UniRef90_UPI00164D9352	PBSX family phage terminase large subunit	NA
UHGV-0185077_29	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0185077_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0185077_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0185077_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0185077_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0185077_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0185077_30	PHROG	phrog_2412	NA	unknown function
UHGV-0185077_30	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0185077_31	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0185077_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0185077_31	UniRef90	UniRef90_A0A352RPP9	XRE family transcriptional regulator	NA
UHGV-0185077_31	eggNOG-mapper	264732.Moth_0281	sequence-specific DNA binding	NA
UHGV-0185077_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0185077_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0185077_31	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0185077_33	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0185077_34	PHROG	phrog_38832	NA	unknown function
UHGV-0185077_34	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0185077_34	Structural annotation	PF11717	NA	NA
UHGV-0185077_35	PHROG	phrog_3777	NA	unknown function
UHGV-0185077_35	UniRef90	UniRef90_A0A845MY74	NA	NA
UHGV-0185077_35	eggNOG-mapper	994573.T472_0204795	NA	NA
UHGV-0185077_35	Pfam	PF12957	NA	DUF3846
UHGV-0185077_35	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0185077_37	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0185077_37	UniRef90	UniRef90_A0A352RPQ2	HNH endonuclease	NA
UHGV-0185077_37	eggNOG-mapper	293826.Amet_2599	HNH endonuclease	NA
UHGV-0185077_37	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0185077_37	Structural annotation	PF13392	NA	NA
UHGV-0185077_38	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0185077_38	UniRef90	UniRef90_C6CX52	NA	NA
UHGV-0185077_38	eggNOG-mapper	324057.Pjdr2_1597	NA	NA
UHGV-0185077_38	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0185077_40	PHROG	phrog_824	NA	unknown function
UHGV-0185077_40	UniRef90	UniRef90_A0A352RPQ6	VRR-NUC domain-containing protein	NA
UHGV-0185077_40	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-0185077_40	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0185077_40	Structural annotation	PF08774	NA	NA
UHGV-0185077_41	UniRef90	UniRef90_UPI0011773349	resolvase	NA
UHGV-0185077_42	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0185077_42	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0185077_42	UniRef90	UniRef90_UPI00164D082B	DEAD/DEAH box helicase	NA
UHGV-0185077_42	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0185077_42	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0185077_42	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0185077_42	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0185077_42	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0185077_42	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0185077_43	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0185077_43	UniRef90	UniRef90_UPI00164DBC57	NA	NA
UHGV-0185077_43	eggNOG-mapper	1007096.BAGW01000023_gene149	NA	NA
UHGV-0185077_43	Pfam	PF06048	NA	DUF927
UHGV-0185077_43	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0185077_43	COG	COG5519	NA	NA
UHGV-0185077_43	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0185077_44	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0185077_44	PHROG	phrog_11992	NA	unknown function
UHGV-0185077_44	UniRef90	UniRef90_A0A352RPQ9	ZnF_CHCC domain-containing protein	NA
UHGV-0185077_44	eggNOG-mapper	742738.HMPREF9460_02494	CHC2 zinc finger	NA
UHGV-0185077_44	PADLOC	drt-cluster192	DRT	DRT
UHGV-0185077_44	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0185077_44	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0185077_44	Structural annotation	PF01807	NA	NA
UHGV-0185077_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0185077_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0185077_45	UniRef90	UniRef90_A0A352RPR0	Single-stranded DNA-binding protein	NA
UHGV-0185077_45	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0185077_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0185077_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0185077_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0185077_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0185077_45	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0185077_46	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0185077_46	UniRef90	UniRef90_UPI00164E5A62	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0185077_46	eggNOG-mapper	1007096.BAGW01000023_gene152	NA	NA
UHGV-0185077_46	Pfam	PF12684	NA	DUF3799
UHGV-0185077_46	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0185077_46	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0185077_47	PHROG	phrog_21613	NA	unknown function
UHGV-0185077_47	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0185077_48	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0185077_48	PHROG	phrog_1499	NA	unknown function
UHGV-0185077_48	UniRef90	UniRef90_UPI00164CEF4D	AAA family ATPase	NA
UHGV-0185077_48	eggNOG-mapper	1007096.BAGW01000023_gene155	DNA recombination	NA
UHGV-0185077_48	Pfam	PF13476	AAA domain	AAA_23
UHGV-0185077_48	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0185077_48	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0185077_49	PHROG	phrog_1029	NA	unknown function
UHGV-0185077_49	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0185077_49	eggNOG-mapper	756499.Desde_1052	NA	NA
UHGV-0185077_49	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0185077_50	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0185077_50	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0185077_50	eggNOG-mapper	1203606.HMPREF1526_01889	replication terminator protein, phage associated	NA
UHGV-0185077_51	UniRef90	UniRef90_UPI00164E842B	zf-TFIIB domain-containing protein	NA
UHGV-0185077_53	PHROG	phrog_22529	NA	unknown function
UHGV-0185077_53	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0185077_53	eggNOG-mapper	537007.BLAHAN_05080	3D domain	NA
UHGV-0185077_53	Pfam	PF06725	3D domain	3D
UHGV-0185077_53	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0185077_53	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0185077_54	UniRef90	UniRef90_UPI00164D0CB8	helix-turn-helix domain-containing protein	NA
UHGV-0185077_54	Pfam	PF05339	NA	DUF739
UHGV-0185077_54	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0185077_59	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0185077_59	UniRef90	UniRef90_B0PAK0	DNA-binding helix-turn-helix protein	NA
UHGV-0185077_59	eggNOG-mapper	445972.ANACOL_01800	NA	NA
UHGV-0185077_59	Pfam	PF05339	NA	DUF739
UHGV-0185077_59	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0185077_59	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0185077_60	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0185077_60	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0185077_60	UniRef90	UniRef90_A0A659FJ82	Helix-turn-helix domain-containing protein	NA
UHGV-0185077_60	eggNOG-mapper	1201292.DR75_340	Helix-turn-helix XRE-family like proteins	NA
UHGV-0185077_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0185077_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA