UHGV-0185226

Genome information

Genome length 31,482 bps

CDS count 58

Completeness 89.64% (medium-quality)

geNomad score 0.9632

Prediction confidence Confident

Genome information
Genome ID	UHGV-0185226
vOTU ID	vOTU-029521
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597110
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9632
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.24
Jumbo phage	No

Genome content
Genome length	31,482 bps
GC content	39.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	89.38%
Average CDS length	488.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0185226_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0185226_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0185226_2	UniRef90	UniRef90_UPI00156FB04E	helix-turn-helix domain-containing protein	NA
UHGV-0185226_2	eggNOG-mapper	1235790.C805_00362	Helix-turn-helix XRE-family like proteins	NA
UHGV-0185226_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0185226_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0185226_2	Structural annotation	PF01381, MF_02017, NF041951, COG1396	NA	NA
UHGV-0185226_3	UniRef90	UniRef90_A0A355TLU7	NA	NA
UHGV-0185226_3	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0185226_3	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0185226_3	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0185226_5	Structural annotation	PF09486, TIGR03090, COG5420	NA	NA
UHGV-0185226_7	PHROG	phrog_585	NA	unknown function
UHGV-0185226_7	UniRef90	UniRef90_UPI00035CA235	NA	NA
UHGV-0185226_7	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0185226_7	Pfam	PF10711	NA	DUF2513
UHGV-0185226_7	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0185226_11	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0185226_11	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0185226_11	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0185226_12	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0185226_12	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0185226_12	UniRef90	UniRef90_C4Z812	Ribonuclease H	NA
UHGV-0185226_12	eggNOG-mapper	635013.TherJR_1738	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0185226_12	Pfam	PF00075	RNase H	RNase_H
UHGV-0185226_12	COG	COG0328	Ribonuclease HI	NA
UHGV-0185226_12	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0185226_13	Structural annotation	PF18066, NF007780, COG1544	NA	NA
UHGV-0185226_14	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0185226_14	PHROG	phrog_5696	NA	unknown function
UHGV-0185226_14	UniRef90	UniRef90_A0A0M6WYD5	N6_Mtase domain-containing protein	NA
UHGV-0185226_14	eggNOG-mapper	1235457.C404_25710	N-6 DNA Methylase	NA
UHGV-0185226_14	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0185226_14	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0185226_14	Structural annotation	COG0286	NA	NA
UHGV-0185226_15	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0185226_15	UniRef90	UniRef90_A0A4U9YSC1	Tyrosine recombinase XerD	NA
UHGV-0185226_15	eggNOG-mapper	565653.EGBG_01953	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0185226_15	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0185226_15	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0185226_16	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0185226_16	PHROG	phrog_216	integrase	integration and excision
UHGV-0185226_16	UniRef90	UniRef90_UPI001B3C6404	tyrosine-type recombinase/integrase	NA
UHGV-0185226_16	eggNOG-mapper	397291.C804_01139	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0185226_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0185226_16	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0185226_16	Structural annotation	PF00589, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-0185226_17	KOfam	K14059	int; integrase	NA
UHGV-0185226_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0185226_17	UniRef90	UniRef90_A0A0M6WVP0	Tyr recombinase domain-containing protein	NA
UHGV-0185226_17	eggNOG-mapper	999413.HMPREF1094_00568	Phage integrase family	NA
UHGV-0185226_17	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0185226_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0185226_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0185226_17	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-0185226_18	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0185226_18	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0185226_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0185226_25	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0185226_25	eggNOG-mapper	588581.Cpap_2562	NA	NA
UHGV-0185226_25	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0185226_32	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0185226_32	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0185226_32	UniRef90	UniRef90_A0A3R6LJR5	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0185226_32	eggNOG-mapper	592026.GCWU0000282_000315	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0185226_32	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0185226_32	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0185226_33	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0185226_33	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0185226_33	UniRef90	UniRef90_A0A3R6L2U9	HicB family protein	NA
UHGV-0185226_33	eggNOG-mapper	411460.RUMTOR_02082	NA	NA
UHGV-0185226_33	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0185226_33	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0185226_33	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0185226_34	UniRef90	UniRef90_N9D832	J domain-containing protein	NA
UHGV-0185226_34	eggNOG-mapper	760192.Halhy_5028	NA	NA
UHGV-0185226_35	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0185226_35	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0185226_35	UniRef90	UniRef90_A0A0M6WIX4	HNHc domain-containing protein	NA
UHGV-0185226_35	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0185226_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0185226_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0185226_36	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0185226_36	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0185226_36	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0185226_36	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0185226_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0185226_37	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0185226_37	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0185226_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0185226_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0185226_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0185226_37	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0185226_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-0185226_38	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0185226_38	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0185226_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0185226_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0185226_38	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0185226_39	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0185226_39	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0185226_39	UniRef90	UniRef90_A0A350VIU3	ATP-dependent Clp protease proteolytic subunit (Fragment)	NA
UHGV-0185226_39	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0185226_39	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0185226_39	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0185226_39	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0185226_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-0185226_40	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-0185226_40	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0185226_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0185226_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0185226_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0185226_40	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0185226_42	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-0185226_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0185226_43	Structural annotation	PF05657	NA	NA
UHGV-0185226_44	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0185226_44	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0185226_44	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0185226_44	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0185226_45	PHROG	phrog_88	major tail protein	tail
UHGV-0185226_45	UniRef90	UniRef90_A0A1Q9J4Y1	Phage tail protein	NA
UHGV-0185226_45	eggNOG-mapper	1487921.DP68_11355	phage major tail protein	NA
UHGV-0185226_45	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0185226_45	COG	COG5492	NA	NA
UHGV-0185226_45	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0185226_47	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0185226_47	PHROG	phrog_23464	NA	unknown function
UHGV-0185226_47	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-0185226_47	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0185226_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0185226_48	UniRef90	UniRef90_A0A350VIV2	Phage tail protein	NA
UHGV-0185226_48	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0185226_48	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0185226_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-0185226_48	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0185226_49	PHROG	phrog_13289	tail protein	tail
UHGV-0185226_49	UniRef90	UniRef90_A0A0M6WI67	Prophage_tail domain-containing protein	NA
UHGV-0185226_49	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0185226_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0185226_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0185226_49	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0185226_49	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0185226_50	PHROG	phrog_11037	NA	unknown function
UHGV-0185226_50	UniRef90	UniRef90_A0A0M6WKQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-0185226_50	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0185226_50	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0185226_50	Structural annotation	PF18013	NA	NA
UHGV-0185226_51	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0185226_51	COG	COG4675	Phage tail collar domain	NA
UHGV-0185226_52	PHROG	phrog_15594	NA	unknown function
UHGV-0185226_52	eggNOG-mapper	862969.SCI_1223	NA	NA
UHGV-0185226_52	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0185226_53	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-0185226_54	PHROG	phrog_24103	NA	unknown function
UHGV-0185226_54	eggNOG-mapper	1118055.CAGU01000013_gene761	NA	NA
UHGV-0185226_57	PHROG	phrog_199	holin	lysis
UHGV-0185226_57	UniRef90	UniRef90_A0A350VIW1	Holin	NA
UHGV-0185226_57	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0185226_57	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0185226_57	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0185226_57	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0185226_57	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0185226_58	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0185226_58	PHROG	phrog_435	endolysin	lysis
UHGV-0185226_58	UniRef90	UniRef90_A0A355TJT7	MurNAc-LAA domain-containing protein	NA
UHGV-0185226_58	eggNOG-mapper	1469948.JPNB01000001_gene537	hmm pf01520	NA
UHGV-0185226_58	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0185226_58	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0185226_58	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA