UHGV-0185572

Genome information

Genome length 38,940 bps

CDS count 54

Completeness 100.00% (complete)

geNomad score 0.9736

Prediction confidence Confident

Genome information
Genome ID	UHGV-0185572
vOTU ID	vOTU-007200
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597088
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9736
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.18
Jumbo phage	No

Genome content
Genome length	38,940 bps
GC content	56.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.92%
Average CDS length	666.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0185572_5	Structural annotation	PF01503, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0185572_6	Structural annotation	PF18115, NF000331	NA	NA
UHGV-0185572_7	KOfam	K05521	draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]	NA
UHGV-0185572_7	PHROG	phrog_6572	ADP-ribosylglycohydrolase	other
UHGV-0185572_7	UniRef90	UniRef90_UPI001C38CD7F	ADP-ribosylglycohydrolase family protein	NA
UHGV-0185572_7	eggNOG-mapper	1118060.CAGZ01000031_gene1408	ADP-ribosylglycohydrolase	NA
UHGV-0185572_7	Pfam	PF03747	ADP-ribosylglycohydrolase	ADP_ribosyl_GH
UHGV-0185572_7	COG	COG1397	ADP-ribosylglycohydrolase	NA
UHGV-0185572_7	Structural annotation	PF03747, NF041672, COG1397	NA	NA
UHGV-0185572_8	Structural annotation	PF01503, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0185572_13	PHROG	phrog_21525	NA	unknown function
UHGV-0185572_14	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0185572_14	UniRef90	UniRef90_UPI00145990F3	helix-turn-helix domain-containing protein	NA
UHGV-0185572_14	eggNOG-mapper	1408437.JNJN01000045_gene597	HNH endonuclease	NA
UHGV-0185572_14	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0185572_14	Structural annotation	PF07141	NA	NA
UHGV-0185572_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0185572_15	PHROG	phrog_10250	NA	unknown function
UHGV-0185572_15	UniRef90	UniRef90_A0A843JA90	PBSX family phage terminase large subunit	NA
UHGV-0185572_15	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0185572_15	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0185572_15	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0185572_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0185572_15	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0185572_16	PHROG	phrog_64	portal protein	head and packaging
UHGV-0185572_16	UniRef90	UniRef90_A0A174A8R0	Phage portal protein, SPP1 family	NA
UHGV-0185572_16	eggNOG-mapper	411468.CLOSCI_00292	Phage portal protein, SPP1 family	NA
UHGV-0185572_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0185572_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0185572_17	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0185572_17	UniRef90	UniRef90_UPI00130401BA	minor capsid protein	NA
UHGV-0185572_17	eggNOG-mapper	665950.HMPREF1025_01357	Phage Mu protein F like protein	NA
UHGV-0185572_17	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0185572_17	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0185572_17	COG	COG2369	NA	NA
UHGV-0185572_17	Structural annotation	PF03496, PF06152, MF_04141, NF040688, TIGR01641, COG2369	NA	NA
UHGV-0185572_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0185572_19	UniRef90	UniRef90_A0A6A8M6L6	HK97 gp10 family phage protein	NA
UHGV-0185572_19	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0185572_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0185572_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0185572_19	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0185572_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0185572_20	UniRef90	UniRef90_A0A174AAF6	Clp R domain-containing protein	NA
UHGV-0185572_20	Structural annotation	PF06810	NA	NA
UHGV-0185572_21	PHROG	phrog_212	major head protein	head and packaging
UHGV-0185572_21	UniRef90	UniRef90_A0A8J6JGV9	Phage capsid protein	NA
UHGV-0185572_21	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0185572_21	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0185572_23	PHROG	phrog_17977	NA	unknown function
UHGV-0185572_23	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0185572_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0185572_23	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0185572_24	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0185572_24	Structural annotation	PF11367	NA	NA
UHGV-0185572_25	PHROG	phrog_885	major tail protein	tail
UHGV-0185572_25	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0185572_25	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0185572_25	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0185572_26	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0185572_27	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0185572_27	UniRef90	UniRef90_UPI001F18B975	phage tail tape measure protein	NA
UHGV-0185572_27	eggNOG-mapper	1688.BCUN_0388	phage tail tape measure protein	NA
UHGV-0185572_27	COG	COG5283	Phage-related tail protein	NA
UHGV-0185572_27	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0185572_28	UniRef90	UniRef90_A0A087E4D3	Phage tail protein	NA
UHGV-0185572_28	eggNOG-mapper	78345.BMERY_0869	NA	NA
UHGV-0185572_28	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0185572_29	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0185572_29	PHROG	phrog_538	minor tail protein	tail
UHGV-0185572_29	UniRef90	UniRef90_A0A087E4D2	Phage head fiber protein	NA
UHGV-0185572_29	eggNOG-mapper	78345.BMERY_0868	NA	NA
UHGV-0185572_29	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0185572_29	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0185572_29	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0185572_30	KOfam	K10062	COLEC12; collectin sub-family member 12	NA
UHGV-0185572_30	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0185572_30	eggNOG-mapper	1139219.I569_00242	Prophage endopeptidase tail	NA
UHGV-0185572_30	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0185572_30	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0185572_31	PHROG	phrog_28750	NA	unknown function
UHGV-0185572_32	PHROG	phrog_13141	NA	unknown function
UHGV-0185572_32	UniRef90	UniRef90_A0A087E4D0	Phage-related putative tail protein	NA
UHGV-0185572_32	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0185572_32	Structural annotation	PF20747	NA	NA
UHGV-0185572_34	PHROG	phrog_881	holin	lysis
UHGV-0185572_34	UniRef90	UniRef90_A0A6A2VG10	Holin	NA
UHGV-0185572_34	eggNOG-mapper	1504822.CCNO01000015_gene626	Putative phage holin Dp-1	NA
UHGV-0185572_34	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0185572_34	Structural annotation	PF16938	NA	NA
UHGV-0185572_35	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0185572_35	PHROG	phrog_3393	endolysin	lysis
UHGV-0185572_35	UniRef90	UniRef90_A0A5K1J905	Bifunctional autolysin	NA
UHGV-0185572_35	eggNOG-mapper	39103.U5U408_9CAUD	peptidoglycan catabolic process	NA
UHGV-0185572_35	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0185572_35	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0185572_36	PHROG	phrog_21718	NA	unknown function
UHGV-0185572_36	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0185572_38	PHROG	phrog_16490	NA	unknown function
UHGV-0185572_38	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0185572_39	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0185572_40	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0185572_42	UniRef90	UniRef90_A0A3D4T7E0	XRE family transcriptional regulator	NA
UHGV-0185572_42	eggNOG-mapper	768486.EHR_02785	NA	NA
UHGV-0185572_42	Pfam	PF05339	NA	DUF739
UHGV-0185572_42	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0185572_43	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0185572_43	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0185572_43	UniRef90	UniRef90_A0A2A7B7A2	ATP-dependent helicase	NA
UHGV-0185572_43	eggNOG-mapper	646529.Desaci_1278	snf2 family	NA
UHGV-0185572_43	PADLOC	DpdE_00011	DpdE	DPD
UHGV-0185572_43	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0185572_43	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0185572_43	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0185572_43	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0185572_44	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0185572_44	PHROG	phrog_8097	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0185572_44	UniRef90	UniRef90_UPI001C38050F	AAA family ATPase	NA
UHGV-0185572_44	eggNOG-mapper	203119.Cthe_1737	AAA domain	NA
UHGV-0185572_44	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0185572_44	Pfam	PF13479	AAA domain	AAA_24
UHGV-0185572_44	COG	COG2887	RecB family exonuclease	NA
UHGV-0185572_44	Structural annotation	PF13479, PF10926, MF_00350, TIGR01618, TIGR00372, COG0468	NA	NA
UHGV-0185572_45	PHROG	phrog_7778	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0185572_45	UniRef90	UniRef90_A0A1R5GFB4	NA	NA
UHGV-0185572_45	eggNOG-mapper	203119.Cthe_1736	NA	NA
UHGV-0185572_45	Pfam	PF05037	NA	DUF669
UHGV-0185572_45	Structural annotation	PF05037	NA	NA
UHGV-0185572_46	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-0185572_46	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0185572_46	UniRef90	UniRef90_A0A7W3SWF3	DNA polymerase	NA
UHGV-0185572_46	eggNOG-mapper	1280692.AUJL01000009_gene2997	DNA polymerase elongation subunit (Family B)	NA
UHGV-0185572_46	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0185572_46	Structural annotation	PF00136, MF_04100, NF004416, COG0417	NA	NA
UHGV-0185572_47	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0185572_47	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0185572_47	UniRef90	UniRef90_A0A259V1C2	SF3 helicase domain-containing protein	NA
UHGV-0185572_47	eggNOG-mapper	742740.HMPREF9474_02364	Phage plasmid primase, P4 family	NA
UHGV-0185572_47	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0185572_47	Pfam	PF19263	NA	DUF5906
UHGV-0185572_47	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0185572_47	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0185572_47	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0185572_48	PHROG	phrog_761	thymidylate kinase	other
UHGV-0185572_48	UniRef90	UniRef90_A0A6J5N2N2	Tmk Thymidylate kinase	NA
UHGV-0185572_48	eggNOG-mapper	1003195.SCAT_2836	NA	NA
UHGV-0185572_48	Pfam	PF02223	Thymidylate kinase	Thymidylate_kin
UHGV-0185572_48	Pfam	PF01712	Deoxynucleoside kinase	dNK
UHGV-0185572_48	Structural annotation	PF01712, MF_00165, TIGR00041, COG1428	NA	NA
UHGV-0185572_49	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-0185572_49	PHROG	phrog_5131	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0185572_49	UniRef90	UniRef90_A0A6G9LL22	Thymidylat_synt domain-containing protein	NA
UHGV-0185572_49	eggNOG-mapper	1408254.T458_24480	Thymidylate synthase	NA
UHGV-0185572_49	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-0185572_49	COG	COG0207	Thymidylate synthase	NA
UHGV-0185572_49	Structural annotation	PF00303, MF_01686, TIGR03283, COG0207	NA	NA
UHGV-0185572_50	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0185572_50	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0185572_50	UniRef90	UniRef90_F7K2E8	dUTP diphosphatase	NA
UHGV-0185572_50	eggNOG-mapper	658086.HMPREF0994_00027	NA	NA
UHGV-0185572_50	Pfam	PF00692	dUTPase	dUTPase
UHGV-0185572_50	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0185572_50	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA