UHGV-0185664

Genome information

Genome length 15,194 bps

CDS count 15

Completeness 69.12% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0185664
vOTU ID	vOTU-029545
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594234
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.14
Jumbo phage	No

Genome content
Genome length	15,194 bps
GC content	38.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	15
CDS density	95.00%
Average CDS length	963.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0185664_1	PHROG	phrog_6370	dsDNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0185664_1	Structural annotation	PF17548	NA	NA
UHGV-0185664_2	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0185664_2	UniRef90	UniRef90_J9GJ47	SsDNA binding protein (Fragment)	NA
UHGV-0185664_2	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0185664_2	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0185664_2	Structural annotation	PF17427	NA	NA
UHGV-0185664_4	Structural annotation	PF05435	NA	NA
UHGV-0185664_5	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0185664_5	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0185664_5	UniRef90	UniRef90_A0A355RJ67	DNA-directed DNA polymerase	NA
UHGV-0185664_5	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0185664_5	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0185664_5	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0185664_6	PHROG	phrog_2150	terminase	head and packaging
UHGV-0185664_6	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-0185664_6	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0185664_6	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0185664_6	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0185664_8	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0185664_8	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0185664_8	UniRef90	UniRef90_A0A349HRK9	Peptidase_M23 domain-containing protein	NA
UHGV-0185664_8	eggNOG-mapper	665956.HMPREF1032_00102	heme binding	NA
UHGV-0185664_8	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0185664_8	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0185664_10	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0185664_10	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0185664_10	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0185664_10	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0185664_11	PHROG	phrog_2248	tail protein	tail
UHGV-0185664_11	UniRef90	UniRef90_A0A345MZG4	Tail protein	NA
UHGV-0185664_11	eggNOG-mapper	1309583.M4W9Q4_9CAUD	NA	NA
UHGV-0185664_11	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0185664_11	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0185664_11	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0185664_12	PHROG	phrog_2038	upper collar connector	connector
UHGV-0185664_12	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0185664_12	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0185664_12	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0185664_12	Structural annotation	PF05352, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0185664_14	PHROG	phrog_14029	NA	unknown function
UHGV-0185664_14	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0185664_15	KOfam	K01104	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	NA
UHGV-0185664_15	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-0185664_15	eggNOG-mapper	610130.Closa_0587	Tyrosine phosphatase family	NA
UHGV-0185664_15	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-0185664_15	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-0185664_15	Structural annotation	PF13350, TIGR01244, COG2365	NA	NA