UHGV-0185757

Genome information

Genome length 27,587 bps

CDS count 37

Completeness 72.77% (medium-quality)

geNomad score 0.9487

Prediction confidence Confident

Genome information
Genome ID	UHGV-0185757
vOTU ID	vOTU-029555
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2737708_a1_ct21140_vs1@Myoviridae__sp._ctWnI1
BioSample	SAMEA2737708
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9487
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.18
Jumbo phage	No

Genome content
Genome length	27,587 bps
GC content	34.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	92.52%
Average CDS length	694.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0185757_1	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0185757_1	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0185757_1	UniRef90	UniRef90_A0A1I7H419	Site-specific DNA recombinase	NA
UHGV-0185757_1	eggNOG-mapper	1294142.CINTURNW_1680	Resolvase, N terminal domain	NA
UHGV-0185757_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0185757_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0185757_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0185757_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0185757_2	UniRef90	UniRef90_A0A1I1L5T4	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0185757_2	eggNOG-mapper	1280682.AUKA01000011_gene3	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0185757_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0185757_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0185757_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0185757_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0185757_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0185757_4	UniRef90	UniRef90_UPI0018AB7EA8	helix-turn-helix domain-containing protein	NA
UHGV-0185757_4	eggNOG-mapper	1235793.C809_03587	Helix-turn-helix XRE-family like proteins	NA
UHGV-0185757_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0185757_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0185757_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0185757_7	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0185757_7	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0185757_7	eggNOG-mapper	411470.RUMGNA_00203	COG NOG14934 non supervised orthologous group	NA
UHGV-0185757_7	Structural annotation	PF21578	NA	NA
UHGV-0185757_10	PHROG	phrog_398	NA	unknown function
UHGV-0185757_10	UniRef90	UniRef90_UPI0006C0DACF	putative HNHc nuclease	NA
UHGV-0185757_10	eggNOG-mapper	936140.AEOT01000013_gene368	Putative HNHc nuclease	NA
UHGV-0185757_10	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0185757_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0185757_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0185757_11	UniRef90	UniRef90_A0A174PII7	Single-stranded DNA-binding protein	NA
UHGV-0185757_11	eggNOG-mapper	702450.CUW_0167	Single-stranded DNA-binding protein	NA
UHGV-0185757_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0185757_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0185757_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0185757_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0185757_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0185757_13	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0185757_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0185757_18	Pfam	PF07374	NA	DUF1492
UHGV-0185757_18	Structural annotation	PF06530, MF_00245, NF008895, COG1595	NA	NA
UHGV-0185757_19	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0185757_19	UniRef90	UniRef90_A0A844JNS5	Transposase	NA
UHGV-0185757_19	eggNOG-mapper	500633.CLOHIR_01443	HNH endonuclease	NA
UHGV-0185757_19	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0185757_19	Structural annotation	PF07141	NA	NA
UHGV-0185757_20	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0185757_20	UniRef90	UniRef90_A0A844JQT7	HNH endonuclease	NA
UHGV-0185757_20	eggNOG-mapper	642492.Clole_1853	HNH endonuclease	NA
UHGV-0185757_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0185757_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0185757_20	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0185757_21	PHROG	phrog_1066	NA	unknown function
UHGV-0185757_21	UniRef90	UniRef90_A0A844JSL5	Zinc-binding protein	NA
UHGV-0185757_21	eggNOG-mapper	457396.CSBG_01045	NA	NA
UHGV-0185757_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0185757_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0185757_22	UniRef90	UniRef90_A0A844JPW5	Terminase large subunit	NA
UHGV-0185757_22	eggNOG-mapper	457396.CSBG_01046	Terminase	NA
UHGV-0185757_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0185757_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0185757_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0185757_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0185757_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0185757_23	UniRef90	UniRef90_A0A844JPJ4	Phage portal protein	NA
UHGV-0185757_23	eggNOG-mapper	1211817.CCAT010000007_gene1039	Portal protein	NA
UHGV-0185757_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0185757_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0185757_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0185757_24	KOfam	K06904	NA	NA
UHGV-0185757_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0185757_24	UniRef90	UniRef90_A0A844JPI9	HK97 family phage prohead protease	NA
UHGV-0185757_24	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-0185757_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0185757_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0185757_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0185757_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0185757_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0185757_25	UniRef90	UniRef90_A0A844JQI8	Phage major capsid protein	NA
UHGV-0185757_25	eggNOG-mapper	1211817.CCAT010000007_gene1037	Phage major capsid protein, HK97 family	NA
UHGV-0185757_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0185757_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0185757_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0185757_25	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0185757_26	UniRef90	UniRef90_UPI0005DAB1A7	head-tail connector protein	NA
UHGV-0185757_26	eggNOG-mapper	1211817.CCAT010000007_gene1036	Phage gp6-like head-tail connector protein	NA
UHGV-0185757_26	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0185757_26	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0185757_27	PHROG	phrog_25	head closure Hc1	connector
UHGV-0185757_27	UniRef90	UniRef90_A0A844JR27	Phage head closure protein	NA
UHGV-0185757_27	eggNOG-mapper	1292035.H476_3504	Phage head-tail joining protein	NA
UHGV-0185757_27	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0185757_27	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0185757_27	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0185757_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0185757_28	UniRef90	UniRef90_UPI0002F2E4BB	HK97 gp10 family phage protein	NA
UHGV-0185757_28	eggNOG-mapper	1033737.CAEV01000029_gene290	NA	NA
UHGV-0185757_28	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0185757_29	PHROG	phrog_78	tail terminator	connector
UHGV-0185757_29	UniRef90	UniRef90_UPI00100AF062	prohead protease	NA
UHGV-0185757_29	eggNOG-mapper	1227360.C176_12438	NA	NA
UHGV-0185757_29	Structural annotation	PF05657	NA	NA
UHGV-0185757_30	PHROG	phrog_88	major tail protein	tail
UHGV-0185757_30	UniRef90	UniRef90_UPI0018CDFD93	phage tail protein	NA
UHGV-0185757_30	eggNOG-mapper	536232.CLM_2926	NA	NA
UHGV-0185757_30	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0185757_30	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0185757_30	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0185757_33	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0185757_33	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0185757_33	UniRef90	UniRef90_A0A844JPI8	Phage tail tape measure protein	NA
UHGV-0185757_33	eggNOG-mapper	190478.Q8SBP1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0185757_33	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0185757_33	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0185757_33	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0185757_34	UniRef90	UniRef90_UPI001C380B0C	phage tail family protein	NA
UHGV-0185757_34	eggNOG-mapper	632245.CLP_1659	tail component	NA
UHGV-0185757_34	COG	COG4722	Phage-related protein YomH	NA
UHGV-0185757_34	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0185757_35	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0185757_35	UniRef90	UniRef90_UPI0006C3E53B	phage tail protein	NA
UHGV-0185757_35	eggNOG-mapper	929506.CbC4_1228	Phage minor structural protein	NA
UHGV-0185757_35	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0185757_35	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0185757_35	COG	COG4926	Phage-related protein	NA
UHGV-0185757_36	KOfam	K01186	NEU1; sialidase-1 [EC:3.2.1.18]	NA
UHGV-0185757_36	PHROG	phrog_21231	virion structural protein	head and packaging
UHGV-0185757_36	eggNOG-mapper	1292035.H476_2657	BNR repeat-like domain	NA
UHGV-0185757_36	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0185757_36	Pfam	PF13859	BNR repeat-like domain	BNR_3
UHGV-0185757_36	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA