UHGV-0185783

Genome information

Genome length 31,925 bps

CDS count 66

Completeness 100.00% (complete)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0185783
vOTU ID	vOTU-005275
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595420
BioSample	SAMN09781757
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.78
Jumbo phage	No

Genome content
Genome length	31,925 bps
GC content	38.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	94.79%
Average CDS length	464.23 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0185783_1	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0185783_1	UniRef90	UniRef90_UPI000B352C4E	helix-turn-helix domain-containing protein	NA
UHGV-0185783_1	eggNOG-mapper	508419.F8J194_9CAUD	Helix-turn-helix domain	NA
UHGV-0185783_1	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0185783_2	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0185783_2	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0185783_2	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0185783_2	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0185783_2	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0185783_2	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0185783_2	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0185783_2	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0185783_2	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0185783_3	PHROG	phrog_4973	NA	unknown function
UHGV-0185783_3	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0185783_3	eggNOG-mapper	935261.JAGL01000009_gene1175	Helix-turn-helix domain	NA
UHGV-0185783_3	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0185783_3	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0185783_4	PHROG	phrog_7566	NA	unknown function
UHGV-0185783_4	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0185783_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0185783_5	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0185783_5	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0185783_5	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0185783_6	PHROG	phrog_14970	NA	unknown function
UHGV-0185783_6	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0185783_6	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0185783_6	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0185783_6	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0185783_6	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0185783_7	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0185783_7	UniRef90	UniRef90_UPI001D07E623	siphovirus Gp157 family protein	NA
UHGV-0185783_7	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0185783_7	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0185783_7	Structural annotation	PF05565	NA	NA
UHGV-0185783_17	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-0185783_18	PHROG	phrog_16490	NA	unknown function
UHGV-0185783_18	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0185783_20	PHROG	phrog_21718	NA	unknown function
UHGV-0185783_20	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0185783_22	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0185783_22	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0185783_24	AcrCatalog	cluster_17974	NA	NA
UHGV-0185783_26	PHROG	phrog_443	holin	lysis
UHGV-0185783_26	UniRef90	UniRef90_A0A1M6RHE6	Holin, r1t family	NA
UHGV-0185783_26	eggNOG-mapper	469596.HMPREF9488_02591	Putative lactococcus lactis phage r1t holin	NA
UHGV-0185783_26	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0185783_26	Structural annotation	PF16945	NA	NA
UHGV-0185783_27	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0185783_27	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0185783_27	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0185783_27	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0185783_28	KOfam	K07273	acm; lysozyme	NA
UHGV-0185783_28	PHROG	phrog_291	endolysin	lysis
UHGV-0185783_28	UniRef90	UniRef90_A0A354MB03	PG_binding_1 domain-containing protein	NA
UHGV-0185783_28	eggNOG-mapper	1232446.BAIE02000049_gene144	Glycosyl hydrolase, family 25	NA
UHGV-0185783_28	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0185783_28	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0185783_28	Structural annotation	PF01183, PF01476, TIGR02899, NF007360, COG3757, COG1388	NA	NA
UHGV-0185783_31	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-0185783_31	COG	COG1554	Kojibiose phosphorylase YcjT	NA
UHGV-0185783_32	Structural annotation	PF05113, NF033848, COG4379	NA	NA
UHGV-0185783_33	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0185783_34	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0185783_34	eggNOG-mapper	717606.PaecuDRAFT_3132	Phage-related minor tail protein	NA
UHGV-0185783_34	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0185783_34	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0185783_35	PHROG	phrog_706	NA	unknown function
UHGV-0185783_35	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-0185783_35	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0185783_35	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0185783_35	Structural annotation	PF06854	NA	NA
UHGV-0185783_36	PHROG	phrog_11299	NA	unknown function
UHGV-0185783_36	Structural annotation	PF10666	NA	NA
UHGV-0185783_37	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0185783_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0185783_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0185783_38	Structural annotation	PF11114	NA	NA
UHGV-0185783_39	Structural annotation	PF16724	NA	NA
UHGV-0185783_40	Structural annotation	PF20536	NA	NA
UHGV-0185783_42	PHROG	phrog_267	major head protein	head and packaging
UHGV-0185783_42	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-0185783_42	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0185783_43	Structural annotation	PF06810	NA	NA
UHGV-0185783_45	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0185783_45	UniRef90	UniRef90_UPI001897AC3D	phage minor capsid protein	NA
UHGV-0185783_45	eggNOG-mapper	697329.Rumal_1691	NA	NA
UHGV-0185783_45	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0185783_45	Structural annotation	PF06152	NA	NA
UHGV-0185783_46	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0185783_46	UniRef90	UniRef90_A0A844JSD9	MazG domain-containing protein	NA
UHGV-0185783_46	eggNOG-mapper	1499683.CCFF01000005_gene41	NA	NA
UHGV-0185783_48	Structural annotation	PF09871, COG4014	NA	NA
UHGV-0185783_49	eggNOG-mapper	428127.EUBDOL_01518	NA	NA
UHGV-0185783_50	PHROG	phrog_8684	NA	unknown function
UHGV-0185783_50	UniRef90	UniRef90_A0A388TEC3	Protein YopX	NA
UHGV-0185783_50	eggNOG-mapper	1347393.HG726022_gene3579	YopX protein	NA
UHGV-0185783_50	Pfam	PF09643	YopX protein	YopX
UHGV-0185783_50	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0185783_50	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0185783_53	PHROG	phrog_533	portal protein	head and packaging
UHGV-0185783_53	Structural annotation	PF05133, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0185783_54	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0185783_54	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0185783_54	UniRef90	UniRef90_A0A1C6FMV1	Phage terminase, large subunit, PBSX family	NA
UHGV-0185783_54	eggNOG-mapper	1007096.BAGW01000022_gene2657	Terminase-like family	NA
UHGV-0185783_54	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0185783_54	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0185783_54	COG	COG1783	Phage terminase large subunit	NA
UHGV-0185783_54	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0185783_56	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0185783_56	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0185783_56	eggNOG-mapper	469604.HMPREF0946_01097	NA	NA
UHGV-0185783_56	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0185783_58	Structural annotation	PF08207	NA	NA
UHGV-0185783_59	Structural annotation	PF13046	NA	NA
UHGV-0185783_65	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0185783_65	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0185783_65	UniRef90	UniRef90_A0A316T9D1	DNA helicase	NA
UHGV-0185783_65	eggNOG-mapper	1347392.CCEZ01000060_gene3289	Participates in initiation and elongation during chromosome replication	NA
UHGV-0185783_65	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0185783_65	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0185783_65	COG	COG0305	Replicative DNA helicase	NA
UHGV-0185783_65	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0185783_66	PHROG	phrog_16304	NA	unknown function
UHGV-0185783_66	eggNOG-mapper	411490.ANACAC_00800	NA	NA