UHGV-0185788

Genome information

Genome length 48,385 bps

CDS count 77

Completeness 64.92% (medium-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-0185788
vOTU ID	vOTU-022533
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595426
BioSample	SAMN09781757
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.53
Jumbo phage	No

Genome content
Genome length	48,385 bps
GC content	42.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	86.79%
Average CDS length	548.46 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0185788_1	KOfam	K06330	cotH; spore coat protein H	NA
UHGV-0185788_1	PHROG	phrog_28731	NA	unknown function
UHGV-0185788_1	eggNOG-mapper	1114972.AUAW01000002_gene1947	CotH kinase protein	NA
UHGV-0185788_1	Pfam	PF08757	CotH kinase protein	CotH
UHGV-0185788_1	COG	COG5337	Spore coat protein CotH	NA
UHGV-0185788_1	Structural annotation	PF08757, COG5337	NA	NA
UHGV-0185788_2	Structural annotation	PF17994	NA	NA
UHGV-0185788_3	PHROG	phrog_15610	protease	other
UHGV-0185788_3	UniRef90	UniRef90_A0A096AAQ0	Membrane protein	NA
UHGV-0185788_3	eggNOG-mapper	1347393.HG726024_gene2889	NA	NA
UHGV-0185788_4	Structural annotation	PF14545, PF03921, NF040788	NA	NA
UHGV-0185788_5	Structural annotation	PF17212	NA	NA
UHGV-0185788_7	PHROG	phrog_26635	NA	unknown function
UHGV-0185788_7	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0185788_8	PHROG	phrog_22323	NA	unknown function
UHGV-0185788_8	eggNOG-mapper	742817.HMPREF9449_01784	NA	NA
UHGV-0185788_9	PHROG	phrog_156	portal protein	head and packaging
UHGV-0185788_9	eggNOG-mapper	1227276.HMPREF9148_00164	NA	NA
UHGV-0185788_9	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0185788_11	Structural annotation	PF02368	NA	NA
UHGV-0185788_14	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0185788_14	UniRef90	UniRef90_UPI00192482D4	terminase	NA
UHGV-0185788_14	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-0185788_14	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0185788_14	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0185788_15	PHROG	phrog_32516	NA	unknown function
UHGV-0185788_15	eggNOG-mapper	1227276.HMPREF9148_00144	NA	NA
UHGV-0185788_15	Structural annotation	PF11134, COG2706	NA	NA
UHGV-0185788_17	PHROG	phrog_27246	NA	unknown function
UHGV-0185788_20	PHROG	phrog_20732	NA	unknown function
UHGV-0185788_20	UniRef90	UniRef90_UPI000C787A6F	phage holin family protein	NA
UHGV-0185788_20	eggNOG-mapper	742727.HMPREF9447_04857	NA	NA
UHGV-0185788_20	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0185788_21	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0185788_21	PHROG	phrog_181	endolysin	lysis
UHGV-0185788_21	UniRef90	UniRef90_A0A353E7E4	Glyco_hydro_19_cat domain-containing protein	NA
UHGV-0185788_21	eggNOG-mapper	294631.Q5ZGC9_9CAUD	chitin catabolic process	NA
UHGV-0185788_21	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0185788_21	Structural annotation	PF00182, COG3179	NA	NA
UHGV-0185788_22	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-0185788_23	UniRef90	UniRef90_A0A3R6M5X3	DNA-binding protein	NA
UHGV-0185788_23	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-0185788_25	UniRef90	UniRef90_A0A3E5E936	NA	NA
UHGV-0185788_25	Pfam	PF04448	NA	DUF551
UHGV-0185788_25	Structural annotation	PF07875, TIGR02501	NA	NA
UHGV-0185788_28	PHROG	phrog_419	NA	unknown function
UHGV-0185788_28	eggNOG-mapper	936573.HMPREF1147_1354	NA	NA
UHGV-0185788_28	Structural annotation	PF14083	NA	NA
UHGV-0185788_31	PHROG	phrog_24381	NA	unknown function
UHGV-0185788_34	Structural annotation	PF20338	NA	NA
UHGV-0185788_35	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0185788_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0185788_36	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0185788_37	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0185788_37	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-0185788_37	eggNOG-mapper	86416.Clopa_2515	Metallo-beta-lactamase superfamily	NA
UHGV-0185788_37	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0185788_37	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0185788_37	Structural annotation	PF12706, MF_00457, NF041851, COG2220	NA	NA
UHGV-0185788_38	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0185788_38	UniRef90	UniRef90_UPI001F1BC0DA	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-0185788_38	eggNOG-mapper	1283071.R9R4B5_9CAUD	HNH endonuclease	NA
UHGV-0185788_38	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0185788_38	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0185788_38	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0185788_38	Structural annotation	PF13392, PF07463	NA	NA
UHGV-0185788_39	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0185788_39	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0185788_39	UniRef90	UniRef90_A0A3R6PLT7	Recombinase	NA
UHGV-0185788_39	eggNOG-mapper	619693.HMPREF6745_2490	Recombinase, phage RecT family	NA
UHGV-0185788_39	Pfam	PF03837	RecT family	RecT
UHGV-0185788_39	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0185788_39	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0185788_39	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0185788_41	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0185788_41	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0185788_41	UniRef90	UniRef90_A0A3R6HGN7	AAA_15 domain-containing protein	NA
UHGV-0185788_41	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-0185788_41	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-0185788_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0185788_41	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0185788_44	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0185788_44	UniRef90	UniRef90_A0A3E5E957	dUTPase domain-containing protein	NA
UHGV-0185788_44	Pfam	PF00692	dUTPase	dUTPase
UHGV-0185788_44	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0185788_45	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0185788_45	UniRef90	UniRef90_A0A646FRV7	Rha family transcriptional regulator	NA
UHGV-0185788_45	eggNOG-mapper	1347393.HG726022_gene3608	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0185788_45	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0185788_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0185788_45	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0185788_45	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0185788_46	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0185788_46	UniRef90	UniRef90_A0A646FV86	Recombinase	NA
UHGV-0185788_46	eggNOG-mapper	585502.HMPREF0645_2608	NA	NA
UHGV-0185788_46	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0185788_46	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0185788_46	Structural annotation	PF05766	NA	NA
UHGV-0185788_48	PHROG	phrog_16858	NA	unknown function
UHGV-0185788_48	UniRef90	UniRef90_A0A3D6B2E4	ArsR family transcriptional regulator	NA
UHGV-0185788_48	Structural annotation	PF08587	NA	NA
UHGV-0185788_49	UniRef90	UniRef90_A0A415VG24	XRE family transcriptional regulator	NA
UHGV-0185788_49	eggNOG-mapper	869213.JCM21142_31024	Helix-turn-helix XRE-family like proteins	NA
UHGV-0185788_49	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0185788_49	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0185788_52	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0185788_52	UniRef90	UniRef90_A0A3E5E2Y4	HNH endonuclease	NA
UHGV-0185788_52	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0185788_52	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0185788_52	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0185788_52	Structural annotation	COG1403	NA	NA
UHGV-0185788_56	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0185788_57	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0185788_57	UniRef90	UniRef90_UPI001C3832B2	HNH endonuclease	NA
UHGV-0185788_57	eggNOG-mapper	592010.GCWU000182_001481	HNH nucleases	NA
UHGV-0185788_57	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0185788_57	Structural annotation	NF008448	NA	NA
UHGV-0185788_58	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0185788_58	Structural annotation	PF04492, TIGR01714	NA	NA
UHGV-0185788_59	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0185788_59	PHROG	phrog_1	integrase	integration and excision
UHGV-0185788_59	UniRef90	UniRef90_A0A3R6PLE7	Site-specific integrase	NA
UHGV-0185788_59	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-0185788_59	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0185788_59	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0185788_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0185788_59	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0185788_59	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0185788_60	Structural annotation	PF10623	NA	NA
UHGV-0185788_62	Structural annotation	PF19495	NA	NA
UHGV-0185788_63	Structural annotation	PF12286	NA	NA
UHGV-0185788_67	Structural annotation	PF18300	NA	NA
UHGV-0185788_72	Structural annotation	PF20012	NA	NA
UHGV-0185788_75	UniRef90	UniRef90_K1UH98	DNA-binding protein	NA
UHGV-0185788_75	eggNOG-mapper	693979.Bache_2821	Helix-turn-helix XRE-family like proteins	NA
UHGV-0185788_75	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0185788_75	Structural annotation	PF01381, COG3655	NA	NA
UHGV-0185788_77	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA