UHGV-0185800

Genome information

Genome length 34,059 bps

CDS count 54

Completeness 93.90% (high-quality)

geNomad score 0.9649

Prediction confidence Confident

Genome information
Genome ID	UHGV-0185800
vOTU ID	vOTU-066306
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA1906434_a1_ct136039_vs1@Myoviridae__sp._ctL1X1
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9649
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.83
Jumbo phage	No

Genome content
Genome length	34,059 bps
GC content	29.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.38%
Average CDS length	587.11 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0185800_1	KOfam	K01951	guaA, GMPS; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]	NA
UHGV-0185800_1	PHROG	phrog_11956	NA	unknown function
UHGV-0185800_1	UniRef90	UniRef90_R5XLZ2	GMP synthase [glutamine-hydrolyzing]	NA
UHGV-0185800_1	eggNOG-mapper	203119.Cthe_0375	Catalyzes the synthesis of GMP from XMP	NA
UHGV-0185800_1	Pfam	PF00117	Glutamine amidotransferase class-I	GATase
UHGV-0185800_1	Pfam	PF02540	NAD synthase	NAD_synthase
UHGV-0185800_1	Pfam	PF00958	GMP synthase C terminal domain	GMP_synt_C
UHGV-0185800_1	NCBIFam	NF000848.0	glutamine-hydrolyzing GMP synthase	NA
UHGV-0185800_1	COG	COG0519	GMP synthase, PP-ATPase domain/subunit	NA
UHGV-0185800_1	Structural annotation	PF00958, PF00117, PF06508, MF_00344, NF000848, COG0519, COG0518	NA	NA
UHGV-0185800_2	KOfam	K14059	int; integrase	NA
UHGV-0185800_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0185800_2	UniRef90	UniRef90_A0A1Y5KF31	Site-specific integrase	NA
UHGV-0185800_2	eggNOG-mapper	649747.HMPREF0083_00061	Belongs to the 'phage' integrase family	NA
UHGV-0185800_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0185800_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0185800_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0185800_2	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0185800_3	PHROG	phrog_87	metallo-protease	other
UHGV-0185800_3	UniRef90	UniRef90_R5PN39	NA	NA
UHGV-0185800_3	eggNOG-mapper	573061.Clocel_2457	Zn peptidase	NA
UHGV-0185800_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0185800_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0185800_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0185800_4	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0185800_4	PHROG	phrog_8036	NA	unknown function
UHGV-0185800_4	UniRef90	UniRef90_A0A354ME12	DNA damage-inducible protein D	NA
UHGV-0185800_4	eggNOG-mapper	1122173.AXVL01000018_gene461	SOS response	NA
UHGV-0185800_4	AcrCatalog	cluster_17589	NA	NA
UHGV-0185800_4	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0185800_4	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0185800_4	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0185800_4	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0185800_4	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0185800_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0185800_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0185800_5	UniRef90	UniRef90_UPI0004245D12	helix-turn-helix domain-containing protein	NA
UHGV-0185800_5	eggNOG-mapper	1120998.AUFC01000030_gene2204	Helix-turn-helix XRE-family like proteins	NA
UHGV-0185800_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0185800_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0185800_5	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0185800_6	UniRef90	UniRef90_A0A173SW70	Helix-turn-helix domain	NA
UHGV-0185800_11	PHROG	phrog_674	NA	unknown function
UHGV-0185800_11	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-0185800_11	eggNOG-mapper	665956.HMPREF1032_03103	NA	NA
UHGV-0185800_11	Pfam	PF07083	NA	DUF1351
UHGV-0185800_11	Structural annotation	PF07083	NA	NA
UHGV-0185800_12	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0185800_12	UniRef90	UniRef90_R7FH02	Phage recombination protein Bet	NA
UHGV-0185800_12	eggNOG-mapper	596323.HMPREF0554_0900	Phage recombination protein Bet	NA
UHGV-0185800_12	Pfam	PF03837	RecT family	RecT
UHGV-0185800_12	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0185800_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0185800_12	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0185800_13	KOfam	K00784	rnz; ribonuclease Z [EC:3.1.26.11]	NA
UHGV-0185800_13	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0185800_13	UniRef90	UniRef90_R5PYB3	Metallo-beta-lactamase domain protein	NA
UHGV-0185800_13	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0185800_13	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0185800_13	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0185800_13	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0185800_14	Structural annotation	PF16454, NF007974	NA	NA
UHGV-0185800_15	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0185800_15	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0185800_15	eggNOG-mapper	1567011.A0A0A7S128_9VIRU	calcium ion binding	NA
UHGV-0185800_15	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0185800_15	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0185800_15	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0185800_18	PHROG	phrog_1123	NA	unknown function
UHGV-0185800_18	UniRef90	UniRef90_A0A7U3NJT7	Putative transcriptional regulator	NA
UHGV-0185800_18	eggNOG-mapper	1560313.A0A0D3MSU0_9CAUD	NA	NA
UHGV-0185800_18	Structural annotation	PF02002, TIGR03433, COG1695	NA	NA
UHGV-0185800_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0185800_19	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0185800_19	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-0185800_19	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0185800_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0185800_19	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0185800_22	Structural annotation	PF09871, TIGR00739, COG4014	NA	NA
UHGV-0185800_24	PHROG	phrog_10079	NA	unknown function
UHGV-0185800_24	eggNOG-mapper	621372.ACIH01000214_gene1012	NA	NA
UHGV-0185800_25	PHROG	phrog_98	NA	unknown function
UHGV-0185800_25	UniRef90	UniRef90_UPI0009ED9ACA	YopX family protein	NA
UHGV-0185800_25	eggNOG-mapper	945021.TEH_08480	YopX protein	NA
UHGV-0185800_25	Pfam	PF09643	YopX protein	YopX
UHGV-0185800_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0185800_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0185800_31	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0185800_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0185800_35	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0185800_35	UniRef90	UniRef90_R5YUG9	Phage terminase large subunit PBSX family	NA
UHGV-0185800_35	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0185800_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0185800_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0185800_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0185800_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0185800_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-0185800_36	UniRef90	UniRef90_A0A858BRS2	Phage portal protein	NA
UHGV-0185800_36	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0185800_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0185800_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0185800_37	UniRef90	UniRef90_R5YW81	Minor capsid 2 protein	NA
UHGV-0185800_37	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0185800_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0185800_37	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0185800_37	COG	COG2369	NA	NA
UHGV-0185800_37	Structural annotation	PF06152	NA	NA
UHGV-0185800_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0185800_38	UniRef90	UniRef90_R6XV28	Phage minor structural protein GP20	NA
UHGV-0185800_38	eggNOG-mapper	862517.HMPREF9225_1649	COG NOG36366 non supervised orthologous group	NA
UHGV-0185800_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0185800_38	Structural annotation	PF06810	NA	NA
UHGV-0185800_39	PHROG	phrog_212	major head protein	head and packaging
UHGV-0185800_39	UniRef90	UniRef90_A0A416DTJ6	Phage capsid protein	NA
UHGV-0185800_39	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0185800_39	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0185800_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0185800_40	eggNOG-mapper	1391647.AVSV01000003_gene1810	NA	NA
UHGV-0185800_41	Pfam	PF20536	NA	DUF6751
UHGV-0185800_41	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0185800_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0185800_42	UniRef90	UniRef90_R5YSS3	Minor capsid	NA
UHGV-0185800_42	eggNOG-mapper	999413.HMPREF1094_00212	Minor capsid protein	NA
UHGV-0185800_42	Structural annotation	PF11114	NA	NA
UHGV-0185800_43	PHROG	phrog_3266	tail completion	connector
UHGV-0185800_43	eggNOG-mapper	1160721.RBI_II00533	NA	NA
UHGV-0185800_43	Structural annotation	PF12691	NA	NA
UHGV-0185800_44	PHROG	phrog_3099	NA	unknown function
UHGV-0185800_44	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0185800_44	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0185800_46	PHROG	phrog_706	NA	unknown function
UHGV-0185800_46	UniRef90	UniRef90_R5ZNB7	Putative phage gp15 protein	NA
UHGV-0185800_46	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0185800_46	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0185800_47	PHROG	phrog_706	NA	unknown function
UHGV-0185800_47	UniRef90	UniRef90_UPI0011779B2D	bacteriophage Gp15 family protein	NA
UHGV-0185800_47	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0185800_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0185800_48	PHROG	phrog_11491	NA	unknown function
UHGV-0185800_48	UniRef90	UniRef90_R6U6A5	Prophage pi3 protein 59	NA
UHGV-0185800_48	eggNOG-mapper	1410674.JNKU01000056_gene1899	NA	NA
UHGV-0185800_48	Structural annotation	PF11355, PF13828, MF_00791, TIGR02588, COG5633	NA	NA
UHGV-0185800_49	PHROG	phrog_35723	NA	unknown function
UHGV-0185800_49	UniRef90	UniRef90_UPI0010644460	peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0185800_49	eggNOG-mapper	650150.ERH_0621	tape measure	NA
UHGV-0185800_49	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0185800_49	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0185800_49	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0185800_49	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0185800_50	Structural annotation	PF14594, MF_01370, NF033848, COG4379	NA	NA
UHGV-0185800_53	PHROG	phrog_937	hemolysin	other