UHGV-0185809

Genome information

Genome length 19,295 bps

CDS count 25

Completeness 50.78% (medium-quality)

geNomad score 0.9627

Prediction confidence Confident

Genome information
Genome ID	UHGV-0185809
vOTU ID	vOTU-029557
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593958
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9627
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.14
Jumbo phage	No

Genome content
Genome length	19,295 bps
GC content	36.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	93.59%
Average CDS length	724.68 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0185809_2	PHROG	phrog_2316	NA	unknown function
UHGV-0185809_2	UniRef90	UniRef90_UPI0003F57BD1	NA	NA
UHGV-0185809_2	eggNOG-mapper	1173745.A0A059TAL2_9CAUD	NA	NA
UHGV-0185809_2	Pfam	PF16475	NA	DUF5052
UHGV-0185809_2	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0185809_3	PHROG	phrog_2198	Alt-like transcription activator	transcription regulation
UHGV-0185809_3	UniRef90	UniRef90_UPI001A8E7DDF	NA	NA
UHGV-0185809_3	eggNOG-mapper	1229517.AMFD01000018_gene191	NA	NA
UHGV-0185809_3	Pfam	PF05263	NA	DUF722
UHGV-0185809_3	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0185809_3	Structural annotation	PF05263, MF_00674, TIGR01636, COG1595	NA	NA
UHGV-0185809_4	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0185809_4	UniRef90	UniRef90_A0A2Z3KM13	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0185809_4	eggNOG-mapper	1140002.I570_01447	Helix-turn-helix of insertion element transposase	NA
UHGV-0185809_4	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0185809_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0185809_5	PHROG	phrog_10250	NA	unknown function
UHGV-0185809_5	UniRef90	UniRef90_A0A2Z3KMZ1	PBSX family phage terminase large subunit	NA
UHGV-0185809_5	eggNOG-mapper	1329250.WOSG25_061450	Phage terminase, large subunit	NA
UHGV-0185809_5	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0185809_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0185809_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0185809_5	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0185809_6	PHROG	phrog_533	portal protein	head and packaging
UHGV-0185809_6	UniRef90	UniRef90_A0A2Z3KRH8	Capsid protein	NA
UHGV-0185809_6	eggNOG-mapper	646413.C5IUJ2_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0185809_6	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0185809_6	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0185809_6	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0185809_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0185809_7	UniRef90	UniRef90_A0A2Z3KH36	Capsid protein	NA
UHGV-0185809_7	eggNOG-mapper	1229517.AMFD01000018_gene186	Phage minor capsid protein 2	NA
UHGV-0185809_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0185809_7	Structural annotation	PF06152	NA	NA
UHGV-0185809_8	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0185809_8	UniRef90	UniRef90_A0A2Z3KGX7	Scaffolding protein	NA
UHGV-0185809_8	eggNOG-mapper	768486.EHR_02625	Phage minor structural protein GP20	NA
UHGV-0185809_8	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0185809_8	Structural annotation	PF06810	NA	NA
UHGV-0185809_9	PHROG	phrog_422	major head protein	head and packaging
UHGV-0185809_9	UniRef90	UniRef90_UPI000CE578EA	capsid protein	NA
UHGV-0185809_9	eggNOG-mapper	768486.EHR_02620	NA	NA
UHGV-0185809_9	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0185809_10	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0185809_10	UniRef90	UniRef90_UPI0009F32714	Ig-like domain-containing protein	NA
UHGV-0185809_10	eggNOG-mapper	1231377.C426_2212	domain, Protein	NA
UHGV-0185809_10	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0185809_10	COG	COG5492	NA	NA
UHGV-0185809_10	Structural annotation	PF02368, TIGR04225	NA	NA
UHGV-0185809_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0185809_11	UniRef90	UniRef90_A0A1L6R9V2	Protein gp8	NA
UHGV-0185809_11	eggNOG-mapper	562981.HMPREF0428_00979	NA	NA
UHGV-0185809_12	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0185809_12	UniRef90	UniRef90_A0A4D6ALG9	Minor capsid protein	NA
UHGV-0185809_12	eggNOG-mapper	52979.O03932_9CAUD	Minor capsid protein	NA
UHGV-0185809_12	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0185809_12	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0185809_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0185809_13	UniRef90	UniRef90_UPI000302A98F	minor capsid protein	NA
UHGV-0185809_13	eggNOG-mapper	1229517.AMFD01000018_gene181	Minor capsid protein	NA
UHGV-0185809_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0185809_13	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0185809_14	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0185809_14	UniRef90	UniRef90_A0A2Z3KMY1	Capsid protein	NA
UHGV-0185809_14	eggNOG-mapper	764299.STRIC_2534	Minor capsid protein from bacteriophage	NA
UHGV-0185809_14	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0185809_14	Structural annotation	PF12691	NA	NA
UHGV-0185809_15	PHROG	phrog_820	major tail protein	tail
UHGV-0185809_15	UniRef90	UniRef90_A0A6C2C5L6	Phage tail protein	NA
UHGV-0185809_15	eggNOG-mapper	768486.EHR_02590	NA	NA
UHGV-0185809_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0185809_16	PHROG	phrog_1061	NA	unknown function
UHGV-0185809_16	Structural annotation	PF10666	NA	NA
UHGV-0185809_17	PHROG	phrog_706	NA	unknown function
UHGV-0185809_17	UniRef90	UniRef90_A0A1M5XR86	Bacteriophage Gp15 protein	NA
UHGV-0185809_17	eggNOG-mapper	768486.EHR_02580	Bacteriophage Gp15 protein	NA
UHGV-0185809_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0185809_17	Structural annotation	PF06854	NA	NA
UHGV-0185809_18	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0185809_18	UniRef90	UniRef90_A0A2Z3KSW5	Phage tail tape measure protein	NA
UHGV-0185809_18	eggNOG-mapper	926564.KI911577_gene476	Phage tail tape measure protein TP901	NA
UHGV-0185809_18	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0185809_18	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0185809_18	COG	COG5283	Phage-related tail protein	NA
UHGV-0185809_18	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0185809_19	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0185809_19	UniRef90	UniRef90_UPI001BCE730F	phage tail family protein	NA
UHGV-0185809_19	eggNOG-mapper	1231377.C426_1726	Phage tail protein	NA
UHGV-0185809_19	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0185809_19	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0185809_20	PHROG	phrog_538	minor tail protein	tail
UHGV-0185809_20	UniRef90	UniRef90_UPI00109BFB8E	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0185809_20	eggNOG-mapper	43685.Q38130_BPR1T	NA	NA
UHGV-0185809_20	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0185809_20	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0185809_21	PHROG	phrog_1220	head protein	head and packaging
UHGV-0185809_21	UniRef90	UniRef90_A0A7T4THP7	Phage baseplate protein	NA
UHGV-0185809_21	eggNOG-mapper	1140001.I571_01846	NA	NA
UHGV-0185809_21	Structural annotation	PF20747	NA	NA
UHGV-0185809_23	PHROG	phrog_881	holin	lysis
UHGV-0185809_23	UniRef90	UniRef90_A0A1I4GIQ8	Putative phage holin Dp-1	NA
UHGV-0185809_23	eggNOG-mapper	1231377.C426_1722	Putative phage holin Dp-1	NA
UHGV-0185809_23	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0185809_23	Structural annotation	PF16938	NA	NA
UHGV-0185809_25	PHROG	phrog_12298	membrane associated protein	moron, auxiliary metabolic gene and host takeover