UHGV-0185923

Genome information

Genome length 14,716 bps

CDS count 23

Completeness 99.90% (high-quality)

geNomad score 0.9378

Prediction confidence Confident

Genome information
Genome ID	UHGV-0185923
vOTU ID	vOTU-008667
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2580116_a1_ct10390_vs1@Siphoviridae__sp._ctuLZ1
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9378
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.6
Jumbo phage	No

Genome content
Genome length	14,716 bps
GC content	45.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	88.86%
Average CDS length	573.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0185923_1	UniRef90	UniRef90_S2RB81	Alpha-galactosidase (Fragment)	NA
UHGV-0185923_1	eggNOG-mapper	568703.LGG_01001	alpha-galactosidase	NA
UHGV-0185923_1	Pfam	PF02065	Melibiase	Melibiase
UHGV-0185923_1	Pfam	PF16874	Glycosyl hydrolase family 36 C-terminal domain	Glyco_hydro_36C
UHGV-0185923_1	COG	COG3345	Alpha-galactosidase	NA
UHGV-0185923_2	KOfam	K14059	int; integrase	NA
UHGV-0185923_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0185923_2	UniRef90	UniRef90_K6RXE7	Tyr recombinase domain-containing protein	NA
UHGV-0185923_2	eggNOG-mapper	1423816.BACQ01000022_gene760	Belongs to the 'phage' integrase family	NA
UHGV-0185923_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0185923_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0185923_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0185923_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0185923_3	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0185923_3	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0185923_3	UniRef90	UniRef90_A0A249DDY5	HTH cro/C1-type domain-containing protein	NA
UHGV-0185923_3	eggNOG-mapper	1159488.SEQMU2_13765	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0185923_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0185923_3	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0185923_4	UniRef90	UniRef90_A0A249DC69	HTH_17 domain-containing protein	NA
UHGV-0185923_4	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0185923_4	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0185923_5	PHROG	phrog_21261	NA	unknown function
UHGV-0185923_5	eggNOG-mapper	568703.LGG_02888	NA	NA
UHGV-0185923_6	UniRef90	UniRef90_A0A422M7B0	Conserved protein	NA
UHGV-0185923_6	eggNOG-mapper	543734.LCABL_30830	NA	NA
UHGV-0185923_7	PHROG	phrog_17564	NA	unknown function
UHGV-0185923_7	eggNOG-mapper	543734.LCABL_30840	NA	NA
UHGV-0185923_8	PHROG	phrog_15408	NA	unknown function
UHGV-0185923_9	PHROG	phrog_17913	NA	unknown function
UHGV-0185923_9	eggNOG-mapper	568703.LGG_02892	NA	NA
UHGV-0185923_10	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0185923_10	UniRef90	UniRef90_UPI001941AB5C	bifunctional DNA primase/polymerase	NA
UHGV-0185923_10	eggNOG-mapper	543734.LCABL_30870	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-0185923_10	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0185923_10	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0185923_10	COG	COG3598	RecA-family ATPase	NA
UHGV-0185923_10	Structural annotation	PF09250, PF08708, NF040561, COG4983	NA	NA
UHGV-0185923_11	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0185923_11	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0185923_11	UniRef90	UniRef90_UPI0019435AD7	phage/plasmid primase, P4 family	NA
UHGV-0185923_11	eggNOG-mapper	543734.LCABL_30880	Phage plasmid primase, P4	NA
UHGV-0185923_11	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0185923_11	Pfam	PF19263	NA	DUF5906
UHGV-0185923_11	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0185923_11	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0185923_11	Structural annotation	PF05272, PF08706, PF02257, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0185923_12	UniRef90	UniRef90_A0A249DCM3	Phage tail protein	NA
UHGV-0185923_12	eggNOG-mapper	1423816.BACQ01000022_gene751	Phage head-tail joining protein	NA
UHGV-0185923_12	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0185923_12	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0185923_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0185923_13	PHROG	phrog_17742	NA	unknown function
UHGV-0185923_14	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0185923_14	UniRef90	UniRef90_A0A2G9VMY8	Endonuclease	NA
UHGV-0185923_14	eggNOG-mapper	568703.LGG_02896	Phage-associated protein	NA
UHGV-0185923_14	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0185923_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0185923_14	Structural annotation	PF05766	NA	NA
UHGV-0185923_15	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0185923_15	UniRef90	UniRef90_A0A179YJF3	Terminase	NA
UHGV-0185923_15	eggNOG-mapper	1423816.BACQ01000022_gene749	Phage terminase, small subunit	NA
UHGV-0185923_15	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0185923_15	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0185923_15	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0185923_15	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0185923_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0185923_16	UniRef90	UniRef90_A0A249DC78	Terminase	NA
UHGV-0185923_16	eggNOG-mapper	568703.LGG_02898	overlaps another CDS with the same product name	NA
UHGV-0185923_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0185923_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0185923_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0185923_16	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0185923_17	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0185923_17	eggNOG-mapper	568703.LGG_02899	NA	NA
UHGV-0185923_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0185923_18	UniRef90	UniRef90_C2JU36	Phage portal protein, HK97 family	NA
UHGV-0185923_18	eggNOG-mapper	1423816.BACQ01000022_gene745	Phage portal protein	NA
UHGV-0185923_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0185923_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0185923_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0185923_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0185923_19	KOfam	K06904	NA	NA
UHGV-0185923_19	PHROG	phrog_2263	major head protein	head and packaging
UHGV-0185923_19	UniRef90	UniRef90_K0NBD3	Phage capsid protein	NA
UHGV-0185923_19	eggNOG-mapper	543734.LCABL_30950	Phage capsid family	NA
UHGV-0185923_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0185923_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0185923_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0185923_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0185923_19	Structural annotation	PF04586, PF05065, MF_04119, TIGR01554, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0185923_20	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0185923_20	UniRef90	UniRef90_A0A243PYM8	Phage DNA packaging protein	NA
UHGV-0185923_20	eggNOG-mapper	543734.LCABL_30960	Phage gp6-like head-tail connector protein	NA
UHGV-0185923_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0185923_20	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0185923_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0185923_22	PHROG	phrog_15774	NA	unknown function
UHGV-0185923_22	UniRef90	UniRef90_A0A2X0R963	Conserved extracellular protein	NA
UHGV-0185923_22	eggNOG-mapper	543734.LCABL_30970	NA	NA
UHGV-0185923_23	PHROG	phrog_15180	NA	unknown function
UHGV-0185923_23	UniRef90	UniRef90_A0A2N3QW19	Transglycosylase associated protein	NA
UHGV-0185923_23	eggNOG-mapper	1423732.BALS01000106_gene437	Transglycosylase associated protein	NA
UHGV-0185923_23	Pfam	PF04226	Transglycosylase associated protein	Transgly_assoc
UHGV-0185923_23	COG	COG2261	NA	NA