UHGV-0185952

Genome information

Genome length 33,784 bps

CDS count 52

Completeness 89.25% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0185952
vOTU ID	vOTU-029562
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593299
BioSample	SAMN09781784
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.27
Jumbo phage	No

Genome content
Genome length	33,784 bps
GC content	58.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	83.91%
Average CDS length	547.73 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0185952_2	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0185952_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0185952_2	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0185952_2	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0185952_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0185952_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0185952_3	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0185952_3	eggNOG-mapper	903814.ELI_4654	Resolvase, N terminal domain	NA
UHGV-0185952_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0185952_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0185952_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0185952_3	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0185952_4	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0185952_5	PHROG	phrog_28802	NA	unknown function
UHGV-0185952_5	Structural annotation	PF12510	NA	NA
UHGV-0185952_6	PHROG	phrog_20016	NA	unknown function
UHGV-0185952_6	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0185952_6	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0185952_6	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0185952_8	PHROG	phrog_16490	NA	unknown function
UHGV-0185952_8	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0185952_9	PHROG	phrog_22984	NA	unknown function
UHGV-0185952_10	PHROG	phrog_21718	NA	unknown function
UHGV-0185952_10	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0185952_11	PHROG	phrog_3754	NA	unknown function
UHGV-0185952_11	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0185952_13	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0185952_13	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0185952_13	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-0185952_14	PHROG	phrog_21357	endolysin	lysis
UHGV-0185952_14	UniRef90	UniRef90_G9YP37	SLH domain-containing protein	NA
UHGV-0185952_14	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0185952_14	Pfam	PF05257	CHAP domain	CHAP
UHGV-0185952_14	COG	COG1388	LysM repeat	NA
UHGV-0185952_14	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0185952_15	PHROG	phrog_13256	NA	unknown function
UHGV-0185952_15	eggNOG-mapper	1226322.HMPREF1545_02800	NA	NA
UHGV-0185952_16	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-0185952_16	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0185952_17	PHROG	phrog_4105	NA	unknown function
UHGV-0185952_21	KOfam	K06236	COL1A; collagen type I alpha	NA
UHGV-0185952_21	PHROG	phrog_819	tail protein	tail
UHGV-0185952_21	UniRef90	UniRef90_UPI001F4CFECE	collagen-like protein	NA
UHGV-0185952_21	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0185952_22	PHROG	phrog_156	portal protein	head and packaging
UHGV-0185952_22	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0185952_22	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0185952_23	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0185952_23	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0185952_23	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0185952_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0185952_24	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0185952_24	UniRef90	UniRef90_A0A4D7AXL6	Phage terminase large subunit	NA
UHGV-0185952_24	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0185952_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0185952_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0185952_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0185952_25	PHROG	phrog_422	major head protein	head and packaging
UHGV-0185952_25	UniRef90	UniRef90_K1TJJ5	Gp7 (Fragment)	NA
UHGV-0185952_25	eggNOG-mapper	693746.OBV_01700	NA	NA
UHGV-0185952_25	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0185952_25	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0185952_27	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0185952_27	Structural annotation	PF11650	NA	NA
UHGV-0185952_29	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0185952_29	UniRef90	UniRef90_A0A4D7AM67	DNA-packaging protein	NA
UHGV-0185952_29	eggNOG-mapper	693746.OBV_01750	NA	NA
UHGV-0185952_29	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0185952_30	eggNOG-mapper	693746.OBV_01760	NA	NA
UHGV-0185952_30	Structural annotation	PF10723	NA	NA
UHGV-0185952_31	PHROG	phrog_15863	NA	unknown function
UHGV-0185952_31	UniRef90	UniRef90_A0A810QAR9	Molecular chaperone DnaJ	NA
UHGV-0185952_31	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0185952_31	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0185952_32	eggNOG-mapper	547042.BACCOPRO_02157	MutS domain I	NA
UHGV-0185952_32	COG	COG0249	DNA mismatch repair ATPase MutS	NA
UHGV-0185952_34	Structural annotation	PF17917	NA	NA
UHGV-0185952_35	KOfam	K14059	int; integrase	NA
UHGV-0185952_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0185952_35	UniRef90	UniRef90_A0A4D7AYG4	Site-specific integrase	NA
UHGV-0185952_35	eggNOG-mapper	1519439.JPJG01000011_gene49	Phage integrase family	NA
UHGV-0185952_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0185952_35	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0185952_35	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0185952_36	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0185952_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0185952_36	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0185952_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0185952_37	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0185952_37	UniRef90	UniRef90_K1TCM8	Protein containing Helix-turn-helix type 3 domain protein	NA
UHGV-0185952_37	eggNOG-mapper	1341157.RF007C_15030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0185952_37	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0185952_37	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0185952_37	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0185952_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0185952_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0185952_38	UniRef90	UniRef90_A0A7X9EDY6	Helix-turn-helix transcriptional regulator	NA
UHGV-0185952_38	eggNOG-mapper	1688.BCUN_1339	Helix-turn-helix XRE-family like proteins	NA
UHGV-0185952_38	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0185952_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0185952_41	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0185952_41	UniRef90	UniRef90_A0A3D3FA36	Phage antirepressor	NA
UHGV-0185952_41	eggNOG-mapper	994573.T472_0208825	Phage antirepressor protein	NA
UHGV-0185952_41	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0185952_41	COG	COG3617	Prophage antirepressor	NA
UHGV-0185952_41	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0185952_42	Structural annotation	PF12728	NA	NA
UHGV-0185952_44	PHROG	phrog_22529	NA	unknown function
UHGV-0185952_44	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0185952_44	eggNOG-mapper	411461.DORFOR_01578	3D domain	NA
UHGV-0185952_44	Pfam	PF06725	3D domain	3D
UHGV-0185952_44	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0185952_46	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0185952_46	UniRef90	UniRef90_A0A2K9V3J9	Exonuclease	NA
UHGV-0185952_46	eggNOG-mapper	1218075.BAYA01000003_gene606	NA	NA
UHGV-0185952_46	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0185952_47	PHROG	phrog_10048	NA	unknown function
UHGV-0185952_47	eggNOG-mapper	1111134.HMPREF1253_1200	NA	NA
UHGV-0185952_47	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0185952_48	UniRef90	UniRef90_UPI001C100C37	single-stranded DNA-binding protein	NA
UHGV-0185952_48	Structural annotation	PF00436, MF_00984, NF006297, COG0629	NA	NA
UHGV-0185952_49	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0185952_50	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0185952_50	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0185952_50	UniRef90	UniRef90_R6ZAS0	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0185952_50	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0185952_50	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0185952_50	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0185952_50	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0185952_52	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0185952_52	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0185952_52	UniRef90	UniRef90_A0A1Q6JM75	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0185952_52	eggNOG-mapper	1235797.C816_01614	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0185952_52	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0185952_52	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0185952_52	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0185952_52	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA