UHGV-0186027

Genome information

Genome length 25,573 bps

CDS count 33

Completeness 55.45% (medium-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0186027
vOTU ID	vOTU-029570
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2580293_a1_ct20201_vs1@Siphoviridae__sp._ct2D21
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.44
Jumbo phage	No

Genome content
Genome length	25,573 bps
GC content	54.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	93.55%
Average CDS length	729.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0186027_2	PHROG	phrog_11138	NA	unknown function
UHGV-0186027_2	UniRef90	UniRef90_A0A1Y4NC35	Sigma70_r4_2 domain-containing protein	NA
UHGV-0186027_2	eggNOG-mapper	411468.CLOSCI_00232	NA	NA
UHGV-0186027_2	Structural annotation	PF08281, MF_00962, TIGR02479, COG1595	NA	NA
UHGV-0186027_3	PHROG	phrog_7234	NA	unknown function
UHGV-0186027_3	eggNOG-mapper	411468.CLOSCI_00231	NA	NA
UHGV-0186027_4	PHROG	phrog_408	NA	unknown function
UHGV-0186027_4	UniRef90	UniRef90_UPI001EDE3606	rRNA biogenesis protein rrp5	NA
UHGV-0186027_4	eggNOG-mapper	476272.RUMHYD_01446	COG NOG23194 non supervised orthologous group	NA
UHGV-0186027_5	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0186027_5	UniRef90	UniRef90_A0A1Y4V8P7	Nuclease	NA
UHGV-0186027_5	eggNOG-mapper	476272.RUMHYD_01447	NA	NA
UHGV-0186027_5	Pfam	PF10926	NA	DUF2800
UHGV-0186027_5	COG	COG2887	RecB family exonuclease	NA
UHGV-0186027_5	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0186027_6	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0186027_6	UniRef90	UniRef90_UPI0007740113	NA	NA
UHGV-0186027_6	eggNOG-mapper	411468.CLOSCI_00227	COG NOG11396 non supervised orthologous group	NA
UHGV-0186027_6	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0186027_6	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0186027_7	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0186027_7	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0186027_7	UniRef90	UniRef90_C0CKS9	POLAc domain-containing protein	NA
UHGV-0186027_7	eggNOG-mapper	476272.RUMHYD_01449	NA	NA
UHGV-0186027_7	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0186027_7	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0186027_7	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0186027_8	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0186027_8	UniRef90	UniRef90_UPI001EDE6F24	NA	NA
UHGV-0186027_8	eggNOG-mapper	411468.CLOSCI_00225	NA	NA
UHGV-0186027_8	Pfam	PF14359	NA	DUF4406
UHGV-0186027_8	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0186027_9	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0186027_9	UniRef90	UniRef90_UPI0011C6FDA1	virulence-associated E family protein	NA
UHGV-0186027_9	eggNOG-mapper	665956.HMPREF1032_02286	NA	NA
UHGV-0186027_9	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0186027_9	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0186027_9	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0186027_11	PHROG	phrog_9576	NA	unknown function
UHGV-0186027_11	UniRef90	UniRef90_A0A1Y4NBA9	YozE_SAM_like domain-containing protein	NA
UHGV-0186027_11	eggNOG-mapper	665956.HMPREF1032_02285	NA	NA
UHGV-0186027_11	Pfam	PF06855	YozE SAM-like fold	YozE_SAM_like
UHGV-0186027_12	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0186027_12	UniRef90	UniRef90_A0A1Y4VB72	Nuclease	NA
UHGV-0186027_12	eggNOG-mapper	665956.HMPREF1032_02284	VRR_NUC	NA
UHGV-0186027_12	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0186027_13	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0186027_13	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0186027_13	UniRef90	UniRef90_C0CKT3	Helicase ATP-binding domain-containing protein	NA
UHGV-0186027_13	eggNOG-mapper	476272.RUMHYD_01453	NA	NA
UHGV-0186027_13	PADLOC	DpdE_00011	DpdE	DPD
UHGV-0186027_13	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0186027_13	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0186027_13	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-0186027_14	PHROG	phrog_8834	NA	unknown function
UHGV-0186027_14	UniRef90	UniRef90_A0A2X2WSS6	Phage-associated protein	NA
UHGV-0186027_14	eggNOG-mapper	411468.CLOSCI_00221	NA	NA
UHGV-0186027_14	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0186027_15	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0186027_15	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0186027_15	UniRef90	UniRef90_A0A1Y4NFI7	HNH endonuclease	NA
UHGV-0186027_15	eggNOG-mapper	411468.CLOSCI_00220	HNH nucleases	NA
UHGV-0186027_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0186027_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0186027_15	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0186027_16	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0186027_16	UniRef90	UniRef90_A0A7X5J169	Terminase	NA
UHGV-0186027_16	eggNOG-mapper	665950.HMPREF1025_02640	NA	NA
UHGV-0186027_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0186027_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0186027_17	PHROG	phrog_1569	NA	unknown function
UHGV-0186027_17	UniRef90	UniRef90_A0A1Y4EQ28	S-adenosylmethionine synthetase	NA
UHGV-0186027_17	eggNOG-mapper	665950.HMPREF1025_02641	S-adenosylmethionine synthetase, N-terminal domain	NA
UHGV-0186027_17	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-0186027_17	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-0186027_17	Structural annotation	PF01941, MF_00086, TIGR01034, COG0192	NA	NA
UHGV-0186027_18	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0186027_18	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0186027_18	UniRef90	UniRef90_A0A1Y4VAS9	Methyltransferase	NA
UHGV-0186027_18	eggNOG-mapper	663278.Ethha_1828	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0186027_18	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0186027_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0186027_18	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0186027_18	COG	COG0863	DNA modification methylase	NA
UHGV-0186027_18	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0186027_19	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0186027_19	UniRef90	UniRef90_A0A1Y4NBC2	Endonuclease	NA
UHGV-0186027_19	eggNOG-mapper	411473.RUMCAL_00463	HNH endonuclease	NA
UHGV-0186027_19	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0186027_20	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0186027_20	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0186027_20	UniRef90	UniRef90_A0A1Y4NBC0	Cytosine-specific methyltransferase	NA
UHGV-0186027_20	eggNOG-mapper	665950.HMPREF1025_02643	C-5 cytosine-specific DNA methylase	NA
UHGV-0186027_20	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0186027_20	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0186027_20	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0186027_20	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0186027_20	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0186027_21	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0186027_21	UniRef90	UniRef90_A0A1Y4NC44	Virulence protein	NA
UHGV-0186027_21	eggNOG-mapper	476272.RUMHYD_01459	NA	NA
UHGV-0186027_21	AcrCatalog	cluster_14489	NA	NA
UHGV-0186027_22	PHROG	phrog_2431	NA	unknown function
UHGV-0186027_22	UniRef90	UniRef90_A0A1Y4V8S1	NA	NA
UHGV-0186027_22	eggNOG-mapper	658655.HMPREF0988_00548	NA	NA
UHGV-0186027_22	Pfam	PF14192	NA	DUF4314
UHGV-0186027_22	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0186027_22	Structural annotation	PF14192	NA	NA
UHGV-0186027_23	eggNOG-mapper	1235800.C819_03972	NA	NA
UHGV-0186027_23	Pfam	PF20648	NA	DUF6809
UHGV-0186027_23	Structural annotation	PF20648	NA	NA
UHGV-0186027_24	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0186027_24	UniRef90	UniRef90_D4MIN6	Putative amidoligase enzyme	NA
UHGV-0186027_24	eggNOG-mapper	665950.HMPREF1025_02646	Putative amidoligase enzyme	NA
UHGV-0186027_24	AcrCatalog	cluster_58247	NA	NA
UHGV-0186027_24	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0186027_24	Structural annotation	PF12224	NA	NA
UHGV-0186027_26	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-0186027_26	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0186027_26	UniRef90	UniRef90_R6D1E0	GGACT domain-containing protein	NA
UHGV-0186027_26	eggNOG-mapper	665950.HMPREF1025_02647	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-0186027_26	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-0186027_26	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0186027_26	Structural annotation	PF06094, COG2105	NA	NA
UHGV-0186027_27	PHROG	phrog_2945	NA	unknown function
UHGV-0186027_27	UniRef90	UniRef90_D9SLK6	(NiFe) hydrogenase maturation protein HypF	NA
UHGV-0186027_27	eggNOG-mapper	1121334.KB911068_gene2286	NA	NA
UHGV-0186027_29	PHROG	phrog_6231	NA	unknown function
UHGV-0186027_29	UniRef90	UniRef90_A0A1Y4VBG2	Nmad4 domain-containing protein	NA
UHGV-0186027_29	eggNOG-mapper	1121334.KB911068_gene2287	NA	NA
UHGV-0186027_29	Pfam	PF18756	Nucleotide modification associated domain 4	Nmad4
UHGV-0186027_29	Structural annotation	PF18756	NA	NA
UHGV-0186027_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0186027_30	UniRef90	UniRef90_UPI0014733751	terminase large subunit	NA
UHGV-0186027_30	eggNOG-mapper	665950.HMPREF1025_02650	Phage Terminase	NA
UHGV-0186027_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0186027_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0186027_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0186027_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0186027_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0186027_31	UniRef90	UniRef90_B0N9U4	Phage portal protein, HK97 family	NA
UHGV-0186027_31	eggNOG-mapper	665950.HMPREF1025_02651	Phage portal protein	NA
UHGV-0186027_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0186027_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0186027_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0186027_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0186027_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0186027_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0186027_32	UniRef90	UniRef90_B0N9U3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0186027_32	eggNOG-mapper	411468.CLOSCI_00205	Serine dehydrogenase proteinase	NA
UHGV-0186027_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0186027_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0186027_32	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0186027_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0186027_33	UniRef90	UniRef90_B0N9U2	Phage capsid family	NA
UHGV-0186027_33	eggNOG-mapper	411468.CLOSCI_00204	Phage capsid family	NA
UHGV-0186027_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0186027_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0186027_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0186027_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA