UHGV-0186217

Genome information

Genome length 30,125 bps

CDS count 52

Completeness 75.63% (medium-quality)

geNomad score 0.9695

Prediction confidence Confident

Genome information
Genome ID	UHGV-0186217
vOTU ID	vOTU-022500
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596478
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9695
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.75
Jumbo phage	No

Genome content
Genome length	30,125 bps
GC content	35.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	88.74%
Average CDS length	516.75 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0186217_1	KOfam	K14059	int; integrase	NA
UHGV-0186217_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0186217_1	UniRef90	UniRef90_A0A1X9IGD8	Integrase	NA
UHGV-0186217_1	eggNOG-mapper	157924.Q7Y4M3_9CAUD	Phage integrase family	NA
UHGV-0186217_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0186217_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0186217_2	PHROG	phrog_7115	NA	unknown function
UHGV-0186217_2	UniRef90	UniRef90_G8P6T0	bPH_1 domain-containing protein	NA
UHGV-0186217_2	eggNOG-mapper	114416.Q8LTS8_9CAUD	Bacterial PH domain	NA
UHGV-0186217_2	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0186217_2	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0186217_3	PHROG	phrog_11491	NA	unknown function
UHGV-0186217_4	UniRef90	UniRef90_UPI00031C3FE5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0186217_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0186217_5	UniRef90	UniRef90_A0A2A5SD77	HTH-type transcriptional regulator	NA
UHGV-0186217_5	eggNOG-mapper	1121864.OMO_02129	Helix-turn-helix XRE-family like proteins	NA
UHGV-0186217_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0186217_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0186217_5	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0186217_7	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0186217_7	UniRef90	UniRef90_Q9AZF4	Orf6	NA
UHGV-0186217_7	eggNOG-mapper	151539.Q9AZF4_9CAUD	NA	NA
UHGV-0186217_7	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-0186217_8	PHROG	phrog_904	excisionase	integration and excision
UHGV-0186217_8	UniRef90	UniRef90_Q9AZF3	Excisionase	NA
UHGV-0186217_8	eggNOG-mapper	272623.L106345	NA	NA
UHGV-0186217_8	Structural annotation	PF20063	NA	NA
UHGV-0186217_9	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0186217_9	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0186217_9	UniRef90	UniRef90_UPI0018E152E9	ORF6C domain-containing protein	NA
UHGV-0186217_9	eggNOG-mapper	416870.llmg_0797	ORF6C domain	NA
UHGV-0186217_9	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0186217_9	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0186217_9	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0186217_9	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-0186217_10	UniRef90	UniRef90_UPI0002D3B739	NA	NA
UHGV-0186217_10	Pfam	PF07868	NA	DUF1655
UHGV-0186217_12	PHROG	phrog_3150	NA	unknown function
UHGV-0186217_12	eggNOG-mapper	768710.DesyoDRAFT_1106	NA	NA
UHGV-0186217_13	PHROG	phrog_4989	NA	unknown function
UHGV-0186217_13	Structural annotation	PF19190, MF_00791, NF011735, COG3354	NA	NA
UHGV-0186217_14	PHROG	phrog_4729	NA	unknown function
UHGV-0186217_14	UniRef90	UniRef90_A0A8E5K7D2	Putative Cas system-associated protein	NA
UHGV-0186217_14	eggNOG-mapper	1229517.AMFD01000025_gene930	NA	NA
UHGV-0186217_15	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0186217_15	UniRef90	UniRef90_UPI000C7A4314	NA	NA
UHGV-0186217_15	eggNOG-mapper	213777.R9R1G5_9CAUD	NA	NA
UHGV-0186217_15	Pfam	PF06378	NA	DUF1071
UHGV-0186217_15	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0186217_16	PHROG	phrog_1163	NA	unknown function
UHGV-0186217_16	UniRef90	UniRef90_A0A091BRY9	Prephenate dehydrogenase	NA
UHGV-0186217_16	eggNOG-mapper	1225805.J7KBV5_9CAUD	calcium ion binding	NA
UHGV-0186217_16	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0186217_16	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0186217_16	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0186217_16	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG5529	NA	NA
UHGV-0186217_17	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0186217_17	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0186217_17	UniRef90	UniRef90_A0A6L2ZYN3	AAA domain-containing protein	NA
UHGV-0186217_17	eggNOG-mapper	1229517.AMFD01000023_gene1341	EVIDENCE BY HOMOLOGY BIO14.03 Phage related functions and prophages. 33 identical to the orf12 of the phage r1t. Functional equivalent to DnaC of E.coli or DnaI of B.subtilis, which are required for chromosomal replication	NA
UHGV-0186217_17	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0186217_17	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0186217_17	Structural annotation	PF01695, MF_00377, NF006505, COG1484	NA	NA
UHGV-0186217_19	PHROG	phrog_2108	NA	unknown function
UHGV-0186217_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0186217_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0186217_20	UniRef90	UniRef90_K2PT75	Phage resolvase	NA
UHGV-0186217_20	eggNOG-mapper	1231377.C426_1966	Endodeoxyribonuclease RusA	NA
UHGV-0186217_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0186217_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0186217_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0186217_21	PHROG	phrog_1415	NA	unknown function
UHGV-0186217_21	UniRef90	UniRef90_UPI001BCCDABF	helix-turn-helix domain-containing protein	NA
UHGV-0186217_22	PHROG	phrog_3109	NA	unknown function
UHGV-0186217_22	eggNOG-mapper	416870.llmg_0812	NA	NA
UHGV-0186217_22	Pfam	PF06275	NA	DUF1031
UHGV-0186217_22	Structural annotation	PF06275	NA	NA
UHGV-0186217_24	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0186217_24	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0186217_24	UniRef90	UniRef90_K2PTY6	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0186217_24	eggNOG-mapper	1231377.C426_1708	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0186217_24	Pfam	PF00692	dUTPase	dUTPase
UHGV-0186217_24	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0186217_24	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0186217_24	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-0186217_25	PHROG	phrog_23093	NA	unknown function
UHGV-0186217_25	UniRef90	UniRef90_UPI000A6B3D34	NA	NA
UHGV-0186217_28	PHROG	phrog_7446	NA	unknown function
UHGV-0186217_28	UniRef90	UniRef90_Q9MC27	ORF56	NA
UHGV-0186217_29	PHROG	phrog_22719	NA	unknown function
UHGV-0186217_29	UniRef90	UniRef90_UPI001A8D298B	NA	NA
UHGV-0186217_29	eggNOG-mapper	1231377.C426_1970	NA	NA
UHGV-0186217_29	Pfam	PF07852	NA	DUF1642
UHGV-0186217_29	Structural annotation	PF07852	NA	NA
UHGV-0186217_30	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0186217_30	UniRef90	UniRef90_UPI0018997E47	NA	NA
UHGV-0186217_30	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0186217_31	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0186217_31	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0186217_31	UniRef90	UniRef90_UPI001F1D79DC	site-specific DNA-methyltransferase	NA
UHGV-0186217_31	eggNOG-mapper	1408823.AXUS01000035_gene1787	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0186217_31	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0186217_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0186217_31	COG	COG0863	DNA modification methylase	NA
UHGV-0186217_31	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0186217_32	UniRef90	UniRef90_UPI0013FD5769	helix-turn-helix transcriptional regulator	NA
UHGV-0186217_35	PHROG	phrog_2316	NA	unknown function
UHGV-0186217_35	UniRef90	UniRef90_UPI0003F57BD1	NA	NA
UHGV-0186217_35	eggNOG-mapper	1173745.A0A059TAL2_9CAUD	NA	NA
UHGV-0186217_35	Pfam	PF16475	NA	DUF5052
UHGV-0186217_35	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0186217_36	PHROG	phrog_2198	Alt-like transcription activator	transcription regulation
UHGV-0186217_36	UniRef90	UniRef90_A0A1I4I5A4	Phage transcriptional activator, RinA family	NA
UHGV-0186217_36	eggNOG-mapper	1229517.AMFD01000018_gene191	NA	NA
UHGV-0186217_36	Pfam	PF05263	NA	DUF722
UHGV-0186217_36	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0186217_36	Structural annotation	PF05263, MF_00674, TIGR01636, COG1595	NA	NA
UHGV-0186217_37	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0186217_37	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0186217_37	UniRef90	UniRef90_UPI001F05A7A1	terminase small subunit	NA
UHGV-0186217_37	eggNOG-mapper	1229517.AMFD01000018_gene189	Terminase small subunit	NA
UHGV-0186217_37	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0186217_37	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0186217_37	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0186217_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0186217_38	PHROG	phrog_29775	NA	unknown function
UHGV-0186217_38	UniRef90	UniRef90_A0A0B8R1H3	Large extracellular alpha-helical protein	NA
UHGV-0186217_38	eggNOG-mapper	1229517.AMFD01000018_gene188	Phage terminase, large subunit, PBSX family	NA
UHGV-0186217_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0186217_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0186217_38	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0186217_39	PHROG	phrog_533	portal protein	head and packaging
UHGV-0186217_39	UniRef90	UniRef90_UPI001A9C37E2	phage portal protein	NA
UHGV-0186217_39	eggNOG-mapper	1229517.AMFD01000018_gene187	portal protein	NA
UHGV-0186217_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0186217_39	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0186217_39	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0186217_40	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0186217_40	UniRef90	UniRef90_UPI0013FD9791	phage minor capsid protein	NA
UHGV-0186217_40	eggNOG-mapper	1158601.I585_01158	Phage minor capsid protein 2	NA
UHGV-0186217_40	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0186217_40	COG	COG2369	NA	NA
UHGV-0186217_40	Structural annotation	PF06152	NA	NA
UHGV-0186217_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0186217_41	UniRef90	UniRef90_A0A837SYJ7	Phage capsid and scaffold	NA
UHGV-0186217_41	eggNOG-mapper	646413.C5IUJ4_9CAUD	Phage minor structural protein GP20	NA
UHGV-0186217_41	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0186217_42	PHROG	phrog_544	major head protein	head and packaging
UHGV-0186217_42	UniRef90	UniRef90_A0A0V8D805	Phage major capsid protein	NA
UHGV-0186217_42	eggNOG-mapper	1460635.JCM19038_3466	NA	NA
UHGV-0186217_42	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0186217_42	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0186217_43	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0186217_43	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0186217_43	UniRef90	UniRef90_UPI00054EA0DA	Ig-like domain-containing protein	NA
UHGV-0186217_43	eggNOG-mapper	1231377.C426_2212	domain, Protein	NA
UHGV-0186217_43	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0186217_43	COG	COG5492	NA	NA
UHGV-0186217_43	Structural annotation	PF02368	NA	NA
UHGV-0186217_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0186217_44	UniRef90	UniRef90_A0A0B8QYX3	Coenzyme F420-reducing hydrogenase, beta subunit	NA
UHGV-0186217_44	eggNOG-mapper	1229517.AMFD01000018_gene183	NA	NA
UHGV-0186217_45	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0186217_45	UniRef90	UniRef90_UPI001F06076B	minor capsid protein	NA
UHGV-0186217_45	eggNOG-mapper	1229517.AMFD01000018_gene182	Minor capsid protein	NA
UHGV-0186217_45	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0186217_45	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0186217_46	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0186217_46	UniRef90	UniRef90_UPI0013FD50C5	minor capsid protein	NA
UHGV-0186217_46	eggNOG-mapper	1158601.I585_01153	Minor capsid protein	NA
UHGV-0186217_46	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0186217_46	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0186217_47	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0186217_47	UniRef90	UniRef90_UPI001F05ACF9	minor capsid protein	NA
UHGV-0186217_47	eggNOG-mapper	1229517.AMFD01000018_gene180	Minor capsid protein from bacteriophage	NA
UHGV-0186217_47	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0186217_47	Structural annotation	PF12691	NA	NA
UHGV-0186217_48	PHROG	phrog_820	major tail protein	tail
UHGV-0186217_48	UniRef90	UniRef90_A0A199YR06	Major tail shaft protein	NA
UHGV-0186217_48	eggNOG-mapper	764299.STRIC_2535	NA	NA
UHGV-0186217_48	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0186217_49	PHROG	phrog_1061	NA	unknown function
UHGV-0186217_49	Structural annotation	PF10666	NA	NA
UHGV-0186217_50	PHROG	phrog_706	NA	unknown function
UHGV-0186217_50	UniRef90	UniRef90_UPI0013FD699C	Gp15 family bacteriophage protein	NA
UHGV-0186217_50	eggNOG-mapper	1229517.AMFD01000018_gene176	Bacteriophage Gp15 protein	NA
UHGV-0186217_50	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0186217_50	Structural annotation	PF06854	NA	NA
UHGV-0186217_51	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0186217_51	UniRef90	UniRef90_UPI0003B8D267	tape measure protein	NA
UHGV-0186217_51	eggNOG-mapper	173707.Q938K3_9CAUD	NA	NA
UHGV-0186217_51	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0186217_51	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0186217_52	UniRef90	UniRef90_UPI001F05E71B	phage tail protein	NA
UHGV-0186217_52	eggNOG-mapper	1231377.C426_0892	phage tail	NA
UHGV-0186217_52	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0186217_52	COG	COG4722	Phage-related protein YomH	NA
UHGV-0186217_52	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA