UHGV-0186220

Genome information

Genome length 38,255 bps

CDS count 62

Completeness 85.95% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0186220
vOTU ID	vOTU-029585
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597995
BioSample	NA
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.31
Jumbo phage	No

Genome content
Genome length	38,255 bps
GC content	51.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	89.91%
Average CDS length	559.40 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0186220_1	PHROG	phrog_4433	NA	unknown function
UHGV-0186220_1	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-0186220_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0186220_2	UniRef90	UniRef90_A0A329UR16	HTH cro/C1-type domain-containing protein	NA
UHGV-0186220_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0186220_2	Structural annotation	NF007257, COG1396	NA	NA
UHGV-0186220_3	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0186220_3	PHROG	phrog_19856	NA	unknown function
UHGV-0186220_3	UniRef90	UniRef90_S0JAU4	Mrr_cat domain-containing protein	NA
UHGV-0186220_3	eggNOG-mapper	689781.AUJX01000015_gene1540	restriction endonuclease	NA
UHGV-0186220_3	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0186220_3	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0186220_3	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0186220_3	Structural annotation	PF04471, MF_00722, NF040854, COG1787	NA	NA
UHGV-0186220_4	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0186220_5	KOfam	K14059	int; integrase	NA
UHGV-0186220_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0186220_5	UniRef90	UniRef90_UPI00195CC1EE	tyrosine-type recombinase/integrase	NA
UHGV-0186220_5	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0186220_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0186220_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0186220_5	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0186220_6	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0186220_6	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0186220_9	PHROG	phrog_36767	NA	unknown function
UHGV-0186220_9	UniRef90	UniRef90_UPI00067E7E25	NA	NA
UHGV-0186220_10	Structural annotation	PF18812, COG2929	NA	NA
UHGV-0186220_11	Structural annotation	PF11950, NF008958	NA	NA
UHGV-0186220_12	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-0186220_12	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0186220_12	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0186220_12	Structural annotation	PF04545, MF_00245, TIGR02985, COG2739	NA	NA
UHGV-0186220_13	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0186220_13	PHROG	phrog_1794	amidase	lysis
UHGV-0186220_13	UniRef90	UniRef90_A0A3D4VSU2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0186220_13	eggNOG-mapper	397290.C810_00440	Ami_2	NA
UHGV-0186220_13	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0186220_13	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0186220_13	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0186220_14	PHROG	phrog_13256	NA	unknown function
UHGV-0186220_14	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-0186220_16	PHROG	phrog_937	hemolysin	other
UHGV-0186220_16	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0186220_17	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0186220_17	PHROG	phrog_7158	NA	unknown function
UHGV-0186220_17	UniRef90	UniRef90_UPI001C0D9A0E	metallophosphoesterase	NA
UHGV-0186220_17	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0186220_17	Structural annotation	PF13350, TIGR01244, COG2365	NA	NA
UHGV-0186220_18	KOfam	K06236	COL1A; collagen type I alpha	NA
UHGV-0186220_18	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0186220_18	UniRef90	UniRef90_R6LGA5	SGNH_hydro domain-containing protein	NA
UHGV-0186220_18	eggNOG-mapper	877414.ATWA01000062_gene1616	NA	NA
UHGV-0186220_18	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0186220_18	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0186220_22	PHROG	phrog_32308	NA	unknown function
UHGV-0186220_22	eggNOG-mapper	1122918.KB907248_gene4487	NA	NA
UHGV-0186220_22	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0186220_23	PHROG	phrog_1194	NA	unknown function
UHGV-0186220_23	eggNOG-mapper	1121333.JMLH01000047_gene1008	NA	NA
UHGV-0186220_23	Pfam	PF20458	NA	DUF6711
UHGV-0186220_23	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0186220_24	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0186220_24	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-0186220_24	eggNOG-mapper	1123263.AUKY01000015_gene1620	Phage tail tape measure protein TP901	NA
UHGV-0186220_24	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0186220_25	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0186220_26	UniRef90	UniRef90_UPI001D0975F6	NA	NA
UHGV-0186220_27	eggNOG-mapper	1298920.KI911353_gene2652	NA	NA
UHGV-0186220_27	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0186220_28	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0186220_29	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0186220_30	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0186220_31	UniRef90	UniRef90_A0A1V5X694	Phage gp6-like head-tail connector protein	NA
UHGV-0186220_31	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0186220_31	Structural annotation	TIGR01560	NA	NA
UHGV-0186220_32	PHROG	phrog_544	major head protein	head and packaging
UHGV-0186220_32	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0186220_32	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0186220_35	PHROG	phrog_6577	NA	unknown function
UHGV-0186220_35	UniRef90	UniRef90_A0A3D3Y4T2	Phage_Mu_F domain-containing protein	NA
UHGV-0186220_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0186220_35	COG	COG2369	NA	NA
UHGV-0186220_35	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0186220_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0186220_36	UniRef90	UniRef90_A0A3D3Y472	Phage portal protein	NA
UHGV-0186220_36	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0186220_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0186220_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0186220_37	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0186220_37	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0186220_37	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0186220_37	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0186220_37	COG	COG5410	NA	NA
UHGV-0186220_37	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0186220_38	UniRef90	UniRef90_A0A318EMC2	DNA-packaging protein gp3	NA
UHGV-0186220_38	eggNOG-mapper	877421.AUJT01000054_gene66	NA	NA
UHGV-0186220_38	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0186220_39	PHROG	phrog_33872	NA	unknown function
UHGV-0186220_40	UniRef90	UniRef90_A0A1Y3R5J8	RHH_1 domain-containing protein	NA
UHGV-0186220_40	Structural annotation	PF10723	NA	NA
UHGV-0186220_43	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0186220_43	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0186220_43	UniRef90	UniRef90_A0A3D3Y6X7	FtsK domain-containing protein	NA
UHGV-0186220_43	eggNOG-mapper	690850.Desaf_3016	PFAM cell divisionFtsK SpoIIIE	NA
UHGV-0186220_43	PADLOC	SspH_00004	SspH	SSP
UHGV-0186220_43	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0186220_43	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0186220_43	Structural annotation	PF01580, MF_00350, TIGR03925, COG4128	NA	NA
UHGV-0186220_44	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0186220_44	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0186220_44	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0186220_45	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0186220_46	UniRef90	UniRef90_K1SN71	HTH_30 domain-containing protein	NA
UHGV-0186220_46	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-0186220_47	Structural annotation	PF10013	NA	NA
UHGV-0186220_48	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0186220_48	UniRef90	UniRef90_A0A3Q9RLP4	Deoxyuridine 5'-triphosphate nucleotidohydrolase family protein	NA
UHGV-0186220_48	eggNOG-mapper	645991.Sgly_0324	NA	NA
UHGV-0186220_48	Structural annotation	PF17375	NA	NA
UHGV-0186220_49	UniRef90	UniRef90_UPI001A9B9FB4	FAD-dependent thymidylate synthase	NA
UHGV-0186220_49	eggNOG-mapper	1410632.JHWW01000006_gene695	NA	NA
UHGV-0186220_49	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0186220_49	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0186220_50	PHROG	phrog_31336	NA	unknown function
UHGV-0186220_50	UniRef90	UniRef90_A0A5C7LKL9	NA	NA
UHGV-0186220_50	eggNOG-mapper	1357732.A0A059PYA6_9CAUD	NA	NA
UHGV-0186220_50	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0186220_50	Structural annotation	PF18909	NA	NA
UHGV-0186220_51	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0186220_51	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0186220_51	UniRef90	UniRef90_A0A2U1CFM2	Methyltransferase	NA
UHGV-0186220_51	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0186220_51	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0186220_51	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0186220_51	COG	COG0863	DNA modification methylase	NA
UHGV-0186220_51	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0186220_53	UniRef90	UniRef90_UPI001C10265C	NA	NA
UHGV-0186220_53	Pfam	PF04448	NA	DUF551
UHGV-0186220_53	Structural annotation	NF041588	NA	NA
UHGV-0186220_55	Structural annotation	NF033716	NA	NA
UHGV-0186220_57	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0186220_57	UniRef90	UniRef90_UPI001D09006D	Lar family restriction alleviation protein	NA
UHGV-0186220_57	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0186220_57	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0186220_57	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0186220_57	COG	COG1405	Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB	NA
UHGV-0186220_57	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0186220_58	PHROG	phrog_31029	NA	unknown function
UHGV-0186220_59	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0186220_59	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0186220_59	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0186220_59	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0186220_59	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0186220_59	Structural annotation	TIGR02646, COG1403	NA	NA