UHGV-0186224

Genome information

Genome length 48,389 bps

CDS count 73

Completeness 82.62% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0186224
vOTU ID	vOTU-022772
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597990
BioSample	NA
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.26
Jumbo phage	No

Genome content
Genome length	48,389 bps
GC content	41.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	88.20%
Average CDS length	587.38 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0186224_5	Structural annotation	PF19865	NA	NA
UHGV-0186224_6	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0186224_6	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0186224_6	eggNOG-mapper	1235792.C808_00058	NA	NA
UHGV-0186224_7	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0186224_11	UniRef90	UniRef90_A0A7G9WJY5	Com family DNA-binding transcriptional regulator	NA
UHGV-0186224_11	Pfam	PF10122	NA	Mu-like_Com
UHGV-0186224_11	NCBIFam	TIGR01053.1	zinc finger domain, LSD1 subclass	NA
UHGV-0186224_11	COG	COG4416	Mu-like prophage FluMu protein Com	NA
UHGV-0186224_11	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0186224_12	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0186224_12	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0186224_12	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0186224_12	COG	COG5410	NA	NA
UHGV-0186224_12	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0186224_13	PHROG	phrog_11237	NA	unknown function
UHGV-0186224_13	eggNOG-mapper	476272.RUMHYD_01941	NA	NA
UHGV-0186224_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-0186224_14	UniRef90	UniRef90_UPI00156EA9F5	phage portal protein	NA
UHGV-0186224_14	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0186224_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0186224_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0186224_15	UniRef90	UniRef90_A0A7C7EK05	NA	NA
UHGV-0186224_16	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0186224_16	UniRef90	UniRef90_UPI001D096CC5	NA	NA
UHGV-0186224_16	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0186224_16	Pfam	PF17236	NA	DUF5309
UHGV-0186224_16	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0186224_16	Structural annotation	PF17236, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-0186224_17	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0186224_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0186224_19	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0186224_19	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0186224_20	PHROG	phrog_28328	NA	unknown function
UHGV-0186224_20	eggNOG-mapper	428125.CLOLEP_01381	NA	NA
UHGV-0186224_21	PHROG	phrog_1233	NA	unknown function
UHGV-0186224_21	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0186224_21	eggNOG-mapper	1232453.BAIF02000011_gene3355	NA	NA
UHGV-0186224_22	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0186224_22	AcrCatalog	cluster_24841	NA	NA
UHGV-0186224_22	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0186224_23	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0186224_23	UniRef90	UniRef90_Q4ZBR0	ORF019	NA
UHGV-0186224_23	eggNOG-mapper	1159488.SEQMU2_01825	NA	NA
UHGV-0186224_24	Structural annotation	PF05657	NA	NA
UHGV-0186224_25	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0186224_25	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0186224_28	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0186224_28	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0186224_28	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0186224_28	COG	COG1511	NA	NA
UHGV-0186224_29	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0186224_29	Structural annotation	PF02368, NF041740	NA	NA
UHGV-0186224_30	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0186224_30	UniRef90	UniRef90_UPI00048E4984	Ig-like domain-containing protein	NA
UHGV-0186224_30	eggNOG-mapper	1410658.JHWI01000043_gene447	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS	NA
UHGV-0186224_30	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0186224_30	COG	COG0607	Rhodanese-related sulfurtransferase	NA
UHGV-0186224_30	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0186224_31	PHROG	phrog_1194	NA	unknown function
UHGV-0186224_31	Pfam	PF20458	NA	DUF6711
UHGV-0186224_31	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0186224_32	PHROG	phrog_18190	NA	unknown function
UHGV-0186224_32	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0186224_32	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0186224_32	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0186224_32	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0186224_33	PHROG	phrog_17196	kinase	other
UHGV-0186224_33	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0186224_33	Structural annotation	PF13619, COG3536	NA	NA
UHGV-0186224_34	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-0186224_34	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0186224_34	Structural annotation	PF02839	NA	NA
UHGV-0186224_36	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0186224_36	Structural annotation	NF040910	NA	NA
UHGV-0186224_37	PHROG	phrog_937	hemolysin	other
UHGV-0186224_38	PHROG	phrog_443	holin	lysis
UHGV-0186224_38	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0186224_38	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0186224_38	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0186224_38	Structural annotation	PF16945	NA	NA
UHGV-0186224_39	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0186224_39	PHROG	phrog_670	endolysin	lysis
UHGV-0186224_39	UniRef90	UniRef90_UPI00192054C9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0186224_39	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0186224_39	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0186224_39	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0186224_39	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0186224_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0186224_40	UniRef90	UniRef90_A0A1Q9J746	HTH cro/C1-type domain-containing protein	NA
UHGV-0186224_40	eggNOG-mapper	1536772.R70723_06535	addiction module antidote protein HigA	NA
UHGV-0186224_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0186224_40	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0186224_40	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0186224_41	UniRef90	UniRef90_UPI0011DD7594	helix-turn-helix domain-containing protein	NA
UHGV-0186224_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0186224_41	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0186224_42	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0186224_42	UniRef90	UniRef90_A0A1Q6K841	Bro-N domain-containing protein	NA
UHGV-0186224_42	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0186224_42	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0186224_42	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0186224_42	COG	COG3617	Prophage antirepressor	NA
UHGV-0186224_42	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0186224_43	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0186224_43	PHROG	phrog_37855	NA	unknown function
UHGV-0186224_43	UniRef90	UniRef90_A0A1Q6KA48	Spo0A_C domain-containing protein	NA
UHGV-0186224_43	eggNOG-mapper	1123075.AUDP01000008_gene1706	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0186224_43	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0186224_43	COG	COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	NA
UHGV-0186224_43	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0186224_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0186224_45	PHROG	phrog_26861	NA	unknown function
UHGV-0186224_45	UniRef90	UniRef90_UPI001C02B93C	single-stranded DNA-binding protein	NA
UHGV-0186224_45	eggNOG-mapper	1235790.C805_03806	NA	NA
UHGV-0186224_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0186224_45	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0186224_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0186224_45	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0186224_47	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0186224_47	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0186224_47	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0186224_47	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0186224_47	Pfam	PF13476	AAA domain	AAA_23
UHGV-0186224_47	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0186224_47	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0186224_48	PHROG	phrog_37916	NA	unknown function
UHGV-0186224_49	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0186224_50	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0186224_50	UniRef90	UniRef90_UPI00157154DF	recombinase RecT	NA
UHGV-0186224_50	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0186224_50	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0186224_51	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0186224_51	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0186224_51	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0186224_52	PHROG	phrog_25456	NA	unknown function
UHGV-0186224_54	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0186224_54	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0186224_54	UniRef90	UniRef90_A0A1Q6KA45	Lactamase_B domain-containing protein	NA
UHGV-0186224_54	eggNOG-mapper	457424.BFAG_02390	Metallo-beta-lactamase superfamily	NA
UHGV-0186224_54	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0186224_54	dbAPIS	APIS066	NA	NA
UHGV-0186224_54	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0186224_54	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0186224_56	PHROG	phrog_19106	NA	unknown function
UHGV-0186224_56	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-0186224_56	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0186224_56	Structural annotation	TIGR01453	NA	NA
UHGV-0186224_57	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0186224_57	UniRef90	UniRef90_A0A413Z5U5	Phage_rep_org_N domain-containing protein	NA
UHGV-0186224_57	eggNOG-mapper	908338.HMPREF9286_0278	Phage replisome organizer N-terminal domain protein	NA
UHGV-0186224_57	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0186224_57	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0186224_57	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0186224_58	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0186224_58	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0186224_58	UniRef90	UniRef90_A0A1Q9J827	DNA helicase	NA
UHGV-0186224_58	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0186224_58	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0186224_58	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0186224_58	COG	COG0305	Replicative DNA helicase	NA
UHGV-0186224_58	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0186224_61	PHROG	phrog_22292	NA	unknown function
UHGV-0186224_62	PHROG	phrog_7711	NA	unknown function
UHGV-0186224_62	UniRef90	UniRef90_A0A0N7JDH6	NA	NA
UHGV-0186224_62	eggNOG-mapper	268407.PWYN_15580	NA	NA
UHGV-0186224_63	PHROG	phrog_8684	NA	unknown function
UHGV-0186224_63	UniRef90	UniRef90_A0A414R9Z6	YopX domain-containing protein	NA
UHGV-0186224_63	Pfam	PF09643	YopX protein	YopX
UHGV-0186224_63	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0186224_64	eggNOG-mapper	97139.C824_00134	NA	NA
UHGV-0186224_66	PHROG	phrog_20593	NA	unknown function
UHGV-0186224_67	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0186224_67	UniRef90	UniRef90_A0A173RDU7	HNH endonuclease	NA
UHGV-0186224_67	eggNOG-mapper	1235799.C818_02668	endonuclease activity	NA
UHGV-0186224_67	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0186224_67	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0186224_67	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0186224_68	PHROG	phrog_1571	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0186224_68	UniRef90	UniRef90_A0A1Q9J7B4	HNHc domain-containing protein	NA
UHGV-0186224_68	eggNOG-mapper	702438.HMPREF9431_00759	HNH endonuclease	NA
UHGV-0186224_68	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0186224_68	Structural annotation	NF008448	NA	NA
UHGV-0186224_69	PHROG	phrog_874	NA	unknown function
UHGV-0186224_69	eggNOG-mapper	1235793.C809_02214	NA	NA
UHGV-0186224_69	Structural annotation	PF04266, MF_00684, NF003443, COG4043	NA	NA
UHGV-0186224_72	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0186224_72	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0186224_72	UniRef90	UniRef90_A0A3R6CGB9	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0186224_72	eggNOG-mapper	397291.C804_00950	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0186224_72	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0186224_72	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0186224_72	Structural annotation	PF01507, MF_00063, NF010367, COG0175	NA	NA
UHGV-0186224_73	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0186224_73	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0186224_73	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0186224_73	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0186224_73	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0186224_73	Structural annotation	PF04851, PF16203, MF_01821, NF003426, COG0553	NA	NA