UHGV-0186260

Genome information

Genome length 29,408 bps

CDS count 47

Completeness 85.87% (medium-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0186260
vOTU ID	vOTU-029591
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2737831_b1_ct37_vs2@Myoviridae__sp._ctOtg37@linear
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.91
Jumbo phage	No

Genome content
Genome length	29,408 bps
GC content	29.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.14%
Average CDS length	579.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0186260_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0186260_1	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0186260_1	UniRef90	UniRef90_R6XT61	Single-stranded DNA-binding protein	NA
UHGV-0186260_1	eggNOG-mapper	398512.JQKC01000002_gene1869	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0186260_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0186260_1	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0186260_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0186260_1	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0186260_1	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0186260_2	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0186260_2	eggNOG-mapper	445972.ANACOL_00148	NA	NA
UHGV-0186260_2	Pfam	PF05772	NinB protein	NinB
UHGV-0186260_2	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0186260_3	PHROG	phrog_7566	NA	unknown function
UHGV-0186260_5	PHROG	phrog_16304	NA	unknown function
UHGV-0186260_5	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0186260_5	Pfam	PF19808	NA	DUF6291
UHGV-0186260_5	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0186260_5	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0186260_6	PHROG	phrog_1123	NA	unknown function
UHGV-0186260_6	UniRef90	UniRef90_A0A357WV62	DNA gyrase	NA
UHGV-0186260_6	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-0186260_6	Structural annotation	PF02002, TIGR03433, COG1695	NA	NA
UHGV-0186260_8	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0186260_8	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0186260_8	UniRef90	UniRef90_UPI001BA5F7AD	site-specific DNA-methyltransferase	NA
UHGV-0186260_8	eggNOG-mapper	1123315.AUIP01000014_gene1936	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0186260_8	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0186260_8	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0186260_8	COG	COG0863	DNA modification methylase	NA
UHGV-0186260_8	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0186260_10	eggNOG-mapper	1250232.JQNJ01000001_gene2876	Leucine rich repeats (6 copies)	NA
UHGV-0186260_10	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0186260_10	Structural annotation	NF007410	NA	NA
UHGV-0186260_12	PHROG	phrog_26165	NA	unknown function
UHGV-0186260_17	Structural annotation	TIGR01636	NA	NA
UHGV-0186260_20	PHROG	phrog_10772	NA	unknown function
UHGV-0186260_20	UniRef90	UniRef90_U2K339	TM2 domain protein	NA
UHGV-0186260_20	eggNOG-mapper	411473.RUMCAL_03485	TM2 domain	NA
UHGV-0186260_20	Pfam	PF05154	TM2 domain	TM2
UHGV-0186260_20	COG	COG2314	NA	NA
UHGV-0186260_20	Structural annotation	PF05154, COG2314	NA	NA
UHGV-0186260_22	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0186260_22	UniRef90	UniRef90_A0A1Q6M1V2	HNHc domain-containing protein	NA
UHGV-0186260_22	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-0186260_25	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-0186260_25	eggNOG-mapper	397288.C806_00077	NA	NA
UHGV-0186260_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0186260_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0186260_26	UniRef90	UniRef90_A0A1Q6M1W9	Terminase	NA
UHGV-0186260_26	eggNOG-mapper	397288.C806_00076	Phage Terminase	NA
UHGV-0186260_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0186260_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0186260_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0186260_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0186260_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0186260_27	UniRef90	UniRef90_A0A1Q6M1W2	Phage portal protein	NA
UHGV-0186260_27	eggNOG-mapper	1399942.U3PFW0_9CAUD	Phage portal protein	NA
UHGV-0186260_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0186260_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0186260_27	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0186260_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0186260_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0186260_28	UniRef90	UniRef90_A0A1Q6M1U6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0186260_28	eggNOG-mapper	536232.CLM_2055	Belongs to the peptidase S14 family	NA
UHGV-0186260_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0186260_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0186260_28	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0186260_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0186260_29	UniRef90	UniRef90_A0A1U7M5C2	Phage capsid family protein	NA
UHGV-0186260_29	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0186260_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0186260_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0186260_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0186260_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0186260_30	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0186260_30	UniRef90	UniRef90_A0A6P1MNU9	Phage gp6-like head-tail connector protein	NA
UHGV-0186260_30	eggNOG-mapper	508419.F8J164_9CAUD	NA	NA
UHGV-0186260_30	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0186260_30	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0186260_31	PHROG	phrog_25	head closure Hc1	connector
UHGV-0186260_31	UniRef90	UniRef90_F8J165	Putative head-tail adaptor	NA
UHGV-0186260_31	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-0186260_31	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0186260_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0186260_32	eggNOG-mapper	508419.F8J166_9CAUD	NA	NA
UHGV-0186260_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0186260_32	Structural annotation	TIGR01725	NA	NA
UHGV-0186260_33	PHROG	phrog_78	tail terminator	connector
UHGV-0186260_33	UniRef90	UniRef90_UPI000C079ECC	NA	NA
UHGV-0186260_33	eggNOG-mapper	1399942.U3PDS3_9CAUD	NA	NA
UHGV-0186260_33	Structural annotation	PF05657	NA	NA
UHGV-0186260_34	PHROG	phrog_88	major tail protein	tail
UHGV-0186260_34	UniRef90	UniRef90_R6GFP9	Putative major tail protein	NA
UHGV-0186260_34	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-0186260_34	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0186260_36	PHROG	phrog_2115	tail protein	tail
UHGV-0186260_36	eggNOG-mapper	1399942.U3PCS7_9CAUD	NA	NA
UHGV-0186260_36	Structural annotation	PF11836	NA	NA
UHGV-0186260_38	UniRef90	UniRef90_UPI0018CD8BA0	Com family DNA-binding transcriptional regulator	NA
UHGV-0186260_38	eggNOG-mapper	1540257.JQMW01000013_gene732	Mu-like prophage protein Com	NA
UHGV-0186260_39	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0186260_39	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0186260_39	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0186260_39	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0186260_40	eggNOG-mapper	508419.F8J171_9CAUD	Phage tail protein	NA
UHGV-0186260_40	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0186260_40	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0186260_40	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0186260_41	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0186260_41	UniRef90	UniRef90_UPI00135C2B79	phage tail protein	NA
UHGV-0186260_41	eggNOG-mapper	1399942.U3PFX4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0186260_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0186260_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0186260_42	PHROG	phrog_13632	NA	unknown function
UHGV-0186260_43	PHROG	phrog_1794	amidase	lysis
UHGV-0186260_43	UniRef90	UniRef90_R7F968	Peptidoglycan-binding domain 1 protein	NA
UHGV-0186260_43	eggNOG-mapper	1121422.AUMW01000009_gene3264	Papain-like cysteine protease AvrRpt2	NA
UHGV-0186260_43	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0186260_43	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0186260_43	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0186260_43	Structural annotation	PF03412, PF08239, NF040678, COG3807, COG3271	NA	NA