UHGV-0186330

Genome information

Genome length 35,652 bps

CDS count 65

Completeness 63.81% (medium-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-0186330
vOTU ID	vOTU-029597
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598487
BioSample	SAMN10407345
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.78
Jumbo phage	No

Genome content
Genome length	35,652 bps
GC content	53.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	87.90%
Average CDS length	485.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0186330_3	PHROG	phrog_15863	NA	unknown function
UHGV-0186330_3	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0186330_3	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0186330_6	PHROG	phrog_7964	NA	unknown function
UHGV-0186330_6	eggNOG-mapper	382640.pBT01_0008	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0186330_6	Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	Hexapep
UHGV-0186330_6	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0186330_6	Pfam	PF04519	Polymer-forming cytoskeletal	Bactofilin
UHGV-0186330_6	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0186330_7	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0186330_7	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0186330_7	UniRef90	UniRef90_A0A1C5UE43	Stage III sporulation protein E	NA
UHGV-0186330_7	eggNOG-mapper	908340.HMPREF9406_1538	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-0186330_7	PADLOC	SspH_00004	SspH	SSP
UHGV-0186330_7	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0186330_7	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0186330_7	Structural annotation	PF01580, MF_00350, TIGR03925, COG0433	NA	NA
UHGV-0186330_8	eggNOG-mapper	1125712.HMPREF1316_1548	NA	NA
UHGV-0186330_10	PHROG	phrog_6160	NA	unknown function
UHGV-0186330_10	eggNOG-mapper	1121382.JQKG01000014_gene300	NA	NA
UHGV-0186330_11	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0186330_12	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0186330_12	UniRef90	UniRef90_A0A3P6KFK5	MazG family protein	NA
UHGV-0186330_12	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0186330_12	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0186330_12	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0186330_12	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0186330_12	Structural annotation	PF03819, MF_01020, NF002747, COG0140	NA	NA
UHGV-0186330_20	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0186330_20	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0186330_20	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0186330_21	PHROG	phrog_2045	NA	unknown function
UHGV-0186330_21	UniRef90	UniRef90_UPI001379B50A	NA	NA
UHGV-0186330_21	eggNOG-mapper	1235790.C805_00077	NA	NA
UHGV-0186330_21	Pfam	PF07505	NA	DUF5131
UHGV-0186330_21	COG	COG4422	NA	NA
UHGV-0186330_21	Structural annotation	PF07505, TIGR04471, COG4422	NA	NA
UHGV-0186330_22	PHROG	phrog_7545	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0186330_22	UniRef90	UniRef90_A0A0F8XHQ5	HNHc domain-containing protein	NA
UHGV-0186330_22	eggNOG-mapper	504472.Slin_1577	HNH endonuclease	NA
UHGV-0186330_22	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0186330_23	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0186330_23	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0186330_23	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0186330_26	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0186330_26	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0186330_28	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0186330_29	eggNOG-mapper	991905.SL003B_3762	NA	NA
UHGV-0186330_30	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0186330_30	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0186330_30	UniRef90	UniRef90_UPI00100A5F8C	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0186330_30	eggNOG-mapper	1095750.HMPREF9970_1673	Endodeoxyribonuclease RusA	NA
UHGV-0186330_30	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0186330_30	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0186330_30	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0186330_31	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0186330_31	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0186330_31	UniRef90	UniRef90_A0A2D9D6H0	Replicative DNA helicase	NA
UHGV-0186330_31	eggNOG-mapper	435837.HMPREF0798_01654	Participates in initiation and elongation during chromosome replication	NA
UHGV-0186330_31	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0186330_31	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0186330_31	COG	COG0305	Replicative DNA helicase	NA
UHGV-0186330_31	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0186330_32	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0186330_32	UniRef90	UniRef90_A3U276	Bacteriophage-related protein	NA
UHGV-0186330_32	eggNOG-mapper	1298920.KI911353_gene2714	DnaD domain protein	NA
UHGV-0186330_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0186330_33	eggNOG-mapper	429009.Adeg_0703	DnaD domain protein	NA
UHGV-0186330_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0186330_35	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0186330_35	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0186330_35	UniRef90	UniRef90_A0A354AUE2	Recombinase RecT	NA
UHGV-0186330_35	eggNOG-mapper	1591072.A0A0B5CTU3_9CAUD	DNA metabolic process	NA
UHGV-0186330_35	Pfam	PF03837	RecT family	RecT
UHGV-0186330_35	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0186330_35	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0186330_36	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0186330_36	UniRef90	UniRef90_A0A354AUE1	YqaJ domain-containing protein	NA
UHGV-0186330_36	eggNOG-mapper	428125.CLOLEP_01823	YqaJ viral recombinase family	NA
UHGV-0186330_36	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0186330_36	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0186330_36	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0186330_36	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0186330_42	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0186330_42	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0186330_42	UniRef90	UniRef90_A0A1H0A479	Anti-repressor protein	NA
UHGV-0186330_42	eggNOG-mapper	1121091.AUMP01000003_gene2544	BRO family, N-terminal domain	NA
UHGV-0186330_42	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0186330_42	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0186330_42	COG	COG3617	Prophage antirepressor	NA
UHGV-0186330_42	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0186330_43	UniRef90	UniRef90_A0A395YD28	XRE family transcriptional regulator	NA
UHGV-0186330_43	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-0186330_43	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0186330_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0186330_44	UniRef90	UniRef90_A0A1B1I1G7	HTH cro/C1-type domain-containing protein	NA
UHGV-0186330_44	eggNOG-mapper	1262449.CP6013_3167	Helix-turn-helix domain protein	NA
UHGV-0186330_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0186330_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0186330_47	PHROG	phrog_2172	NA	unknown function
UHGV-0186330_47	UniRef90	UniRef90_A0A0H5PWQ9	Rep_3 domain-containing protein	NA
UHGV-0186330_47	eggNOG-mapper	1395513.P343_18240	Protein involved in initiation of plasmid replication	NA
UHGV-0186330_47	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0186330_47	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0186330_47	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0186330_47	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0186330_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0186330_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0186330_48	UniRef90	UniRef90_A0A1V5V4E6	Putative transcriptional regulator	NA
UHGV-0186330_48	eggNOG-mapper	411467.BACCAP_02432	sequence-specific DNA binding	NA
UHGV-0186330_48	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0186330_48	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0186330_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0186330_48	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-0186330_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0186330_50	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0186330_50	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0186330_50	UniRef90	UniRef90_A0A7W9SGL3	Chromosome partitioning protein	NA
UHGV-0186330_50	eggNOG-mapper	679200.HMPREF9333_02272	CobQ CobB MinD ParA nucleotide binding domain	NA
UHGV-0186330_50	Pfam	PF13614	AAA domain	AAA_31
UHGV-0186330_50	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0186330_50	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0186330_52	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0186330_53	PHROG	phrog_16490	NA	unknown function
UHGV-0186330_53	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0186330_54	PHROG	phrog_22984	NA	unknown function
UHGV-0186330_55	PHROG	phrog_21718	NA	unknown function
UHGV-0186330_55	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0186330_57	PHROG	phrog_6918	holin	lysis
UHGV-0186330_57	UniRef90	UniRef90_R6LQE1	Putative phage holin LL-H family	NA
UHGV-0186330_57	eggNOG-mapper	1226322.HMPREF1545_03575	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0186330_57	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0186330_57	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0186330_58	PHROG	phrog_1863	NA	unknown function
UHGV-0186330_58	eggNOG-mapper	1232449.BAHV02000017_gene1511	NA	NA
UHGV-0186330_59	UniRef90	UniRef90_A0A1V5Q5W6	Putative peptidoglycan binding domain protein	NA
UHGV-0186330_59	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0186330_59	Structural annotation	PF05382, PF08239, NF033743, COG0791	NA	NA
UHGV-0186330_60	PHROG	phrog_8716	tail fiber protein	tail
UHGV-0186330_60	UniRef90	UniRef90_UPI0009FD3DB4	phage tail assembly chaperone	NA
UHGV-0186330_60	eggNOG-mapper	1121440.AUMA01000019_gene1725	NA	NA
UHGV-0186330_60	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0186330_60	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0186330_61	PHROG	phrog_4242	tail fiber protein	tail
UHGV-0186330_61	eggNOG-mapper	649747.HMPREF0083_00644	NA	NA
UHGV-0186330_62	PHROG	phrog_1382	NA	unknown function
UHGV-0186330_62	eggNOG-mapper	1336234.JAGN01000004_gene512	NA	NA
UHGV-0186330_64	Pfam	PF21722	Glycine-rich domain	Gly_rich_2