UHGV-0186352

Genome information

Genome length 25,023 bps

CDS count 37

Completeness 65.54% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0186352
vOTU ID	vOTU-029599
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593332
BioSample	SAMN09781784
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.7
Jumbo phage	No

Genome content
Genome length	25,023 bps
GC content	60.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	92.44%
Average CDS length	628.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0186352_1	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0186352_1	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0186352_1	UniRef90	UniRef90_A0A1V5IAX9	Methyltransferase	NA
UHGV-0186352_1	eggNOG-mapper	693746.OBV_19980	DNA methylase	NA
UHGV-0186352_1	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0186352_1	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0186352_1	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0186352_1	COG	COG0863	DNA modification methylase	NA
UHGV-0186352_1	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0186352_2	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0186352_2	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0186352_2	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0186352_2	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0186352_2	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0186352_2	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0186352_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0186352_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0186352_3	UniRef90	UniRef90_A0A845R4S1	Terminase large subunit	NA
UHGV-0186352_3	eggNOG-mapper	742738.HMPREF9460_00872	Phage Terminase	NA
UHGV-0186352_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0186352_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0186352_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0186352_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0186352_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-0186352_5	UniRef90	UniRef90_A0A845R2J9	Phage portal protein	NA
UHGV-0186352_5	eggNOG-mapper	397288.C806_01508	Phage portal protein	NA
UHGV-0186352_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0186352_5	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0186352_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0186352_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0186352_6	PHROG	phrog_16951	NA	unknown function
UHGV-0186352_6	UniRef90	UniRef90_R6LX42	PE-PGRS family protein	NA
UHGV-0186352_6	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0186352_6	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0186352_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-0186352_7	UniRef90	UniRef90_A0A1Y4RLC8	Phage major capsid protein	NA
UHGV-0186352_7	eggNOG-mapper	1236976.JCM16418_795	Phage capsid family	NA
UHGV-0186352_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0186352_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0186352_7	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0186352_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0186352_8	UniRef90	UniRef90_UPI001C018007	head-tail connector protein	NA
UHGV-0186352_8	eggNOG-mapper	742738.HMPREF9460_00878	NA	NA
UHGV-0186352_8	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0186352_8	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0186352_9	PHROG	phrog_25	head closure Hc1	connector
UHGV-0186352_9	UniRef90	UniRef90_UPI001898DBDF	phage head closure protein	NA
UHGV-0186352_9	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0186352_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0186352_9	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0186352_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0186352_10	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0186352_10	Structural annotation	PF05657	NA	NA
UHGV-0186352_11	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0186352_11	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0186352_11	Structural annotation	TIGR01725	NA	NA
UHGV-0186352_12	PHROG	phrog_88	major tail protein	tail
UHGV-0186352_12	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0186352_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0186352_14	PHROG	phrog_23464	NA	unknown function
UHGV-0186352_14	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0186352_14	COG	COG5412	Phage-related protein	NA
UHGV-0186352_14	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0186352_16	PHROG	phrog_32744	NA	unknown function
UHGV-0186352_16	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0186352_16	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0186352_17	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0186352_17	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-0186352_17	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0186352_18	eggNOG-mapper	1226322.HMPREF1545_00128	NA	NA
UHGV-0186352_19	PHROG	phrog_134	NA	unknown function
UHGV-0186352_19	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0186352_19	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0186352_20	PHROG	phrog_1863	NA	unknown function
UHGV-0186352_20	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0186352_21	PHROG	phrog_13256	NA	unknown function
UHGV-0186352_21	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0186352_23	PHROG	phrog_18955	NA	unknown function
UHGV-0186352_23	UniRef90	UniRef90_UPI00164D2830	phosphodiester glycosidase family protein	NA
UHGV-0186352_23	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0186352_23	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0186352_23	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0186352_24	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0186352_24	PHROG	phrog_894	endolysin	lysis
UHGV-0186352_24	UniRef90	UniRef90_K1TJK4	Peptidase_M15_3 domain-containing protein (Fragment)	NA
UHGV-0186352_24	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0186352_24	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0186352_24	COG	COG3108	NA	NA
UHGV-0186352_24	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0186352_25	UniRef90	UniRef90_A0A658JVX5	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0186352_25	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0186352_27	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0186352_27	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0186352_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0186352_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0186352_27	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0186352_31	PHROG	phrog_22984	NA	unknown function
UHGV-0186352_32	PHROG	phrog_16490	NA	unknown function
UHGV-0186352_32	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0186352_33	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0186352_34	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0186352_35	KOfam	K14059	int; integrase	NA
UHGV-0186352_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0186352_35	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0186352_35	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0186352_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0186352_35	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0186352_35	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0186352_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0186352_36	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA