UHGV-0186450

Genome information

Genome length 28,138 bps

CDS count 54

Completeness 63.23% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0186450
vOTU ID	vOTU-029612
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596903
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.92
Jumbo phage	No

Genome content
Genome length	28,138 bps
GC content	52.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	85.84%
Average CDS length	449.83 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0186450_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0186450_2	PHROG	phrog_10250	NA	unknown function
UHGV-0186450_2	UniRef90	UniRef90_UPI001D0F3A3B	phage terminase large subunit	NA
UHGV-0186450_2	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0186450_2	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0186450_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0186450_2	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0186450_3	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0186450_3	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0186450_3	Structural annotation	PF13542	NA	NA
UHGV-0186450_5	PHROG	phrog_8680	NA	unknown function
UHGV-0186450_5	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0186450_5	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0186450_5	Pfam	PF14386	NA	DUF4417
UHGV-0186450_5	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0186450_5	Structural annotation	PF14386	NA	NA
UHGV-0186450_7	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0186450_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0186450_8	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0186450_8	UniRef90	UniRef90_UPI0012DF3C2B	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0186450_8	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0186450_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0186450_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0186450_8	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0186450_10	PHROG	phrog_3136	NA	unknown function
UHGV-0186450_10	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0186450_10	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0186450_10	Structural annotation	PF12961, NF008917, COG4933	NA	NA
UHGV-0186450_12	UniRef90	UniRef90_UPI001C009709	NA	NA
UHGV-0186450_13	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0186450_13	UniRef90	UniRef90_UPI001C02E649	DnaD domain protein	NA
UHGV-0186450_13	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0186450_13	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0186450_13	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0186450_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0186450_13	Structural annotation	PF09681, MF_01819, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0186450_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0186450_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0186450_14	UniRef90	UniRef90_UPI001C00AA91	single-stranded DNA-binding protein	NA
UHGV-0186450_14	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0186450_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0186450_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0186450_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0186450_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0186450_14	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0186450_15	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0186450_15	UniRef90	UniRef90_A0A6N7W7U3	Recombinase RecT	NA
UHGV-0186450_15	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0186450_15	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0186450_19	Structural annotation	PF14120	NA	NA
UHGV-0186450_20	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0186450_24	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0186450_24	UniRef90	UniRef90_UPI0012DFCA1F	ORF6C domain-containing protein	NA
UHGV-0186450_24	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0186450_24	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0186450_24	COG	COG3617	Prophage antirepressor	NA
UHGV-0186450_25	PHROG	phrog_518	Rha-like transcriptional regulator	transcription regulation
UHGV-0186450_25	UniRef90	UniRef90_UPI001C039A6C	ORF6C domain-containing protein	NA
UHGV-0186450_25	eggNOG-mapper	552396.HMPREF0863_00753	AntA/AntB antirepressor	NA
UHGV-0186450_25	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0186450_25	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0186450_25	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0186450_26	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0186450_28	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0186450_28	UniRef90	UniRef90_UPI000CF638BB	XRE family transcriptional regulator	NA
UHGV-0186450_28	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0186450_28	Structural annotation	PF13443, NF000090, COG1813	NA	NA
UHGV-0186450_29	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0186450_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0186450_29	UniRef90	UniRef90_A0A2V2GTH3	HTH cro/C1-type domain-containing protein	NA
UHGV-0186450_29	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0186450_29	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0186450_29	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0186450_29	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0186450_32	PHROG	phrog_1847	NA	unknown function
UHGV-0186450_32	UniRef90	UniRef90_UPI0012DCCDD6	NA	NA
UHGV-0186450_32	eggNOG-mapper	718252.FP2_06880	NA	NA
UHGV-0186450_32	Pfam	PF13250	NA	DUF4041
UHGV-0186450_32	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0186450_32	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0186450_32	Structural annotation	PF13250, PF19824	NA	NA
UHGV-0186450_35	UniRef90	UniRef90_UPI0018CC79B4	helix-turn-helix domain-containing protein	NA
UHGV-0186450_35	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0186450_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0186450_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0186450_35	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0186450_36	KOfam	K14059	int; integrase	NA
UHGV-0186450_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0186450_36	UniRef90	UniRef90_UPI0012DD7FDB	site-specific integrase	NA
UHGV-0186450_36	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0186450_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0186450_36	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0186450_36	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0186450_38	UniRef90	UniRef90_A0A345BNU6	Spore surface glycoprotein	NA
UHGV-0186450_38	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0186450_39	PHROG	phrog_16490	NA	unknown function
UHGV-0186450_39	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0186450_40	PHROG	phrog_22984	NA	unknown function
UHGV-0186450_43	PHROG	phrog_13890	NA	unknown function
UHGV-0186450_43	eggNOG-mapper	742741.HMPREF9475_00396	NA	NA
UHGV-0186450_43	Structural annotation	NF010256	NA	NA
UHGV-0186450_45	PHROG	phrog_6160	NA	unknown function
UHGV-0186450_45	eggNOG-mapper	397291.C804_04947	NA	NA
UHGV-0186450_47	PHROG	phrog_15303	NA	unknown function
UHGV-0186450_48	PHROG	phrog_1863	NA	unknown function
UHGV-0186450_48	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0186450_49	KOfam	K07273	acm; lysozyme	NA
UHGV-0186450_49	PHROG	phrog_291	endolysin	lysis
UHGV-0186450_49	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0186450_49	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0186450_49	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0186450_49	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0186450_49	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0186450_50	Structural annotation	NF040910	NA	NA
UHGV-0186450_52	PHROG	phrog_24267	NA	unknown function
UHGV-0186450_52	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-0186450_52	eggNOG-mapper	500635.MITSMUL_03163	Membrane	NA
UHGV-0186450_52	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0186450_53	PHROG	phrog_23587	NA	unknown function
UHGV-0186450_53	eggNOG-mapper	471855.Shel_15450	NA	NA
UHGV-0186450_54	UniRef90	UniRef90_UPI0012DF3082	NA	NA
UHGV-0186450_54	eggNOG-mapper	742738.HMPREF9460_02532	NA	NA
UHGV-0186450_54	COG	COG4385	Bacteriophage P2-related tail formation protein	NA