UHGV-0186451

Genome information

Genome length 27,022 bps

CDS count 45

Completeness 88.66% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0186451
vOTU ID	vOTU-029613
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596906
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.56
Jumbo phage	No

Genome content
Genome length	27,022 bps
GC content	48.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.75%
Average CDS length	567.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0186451_1	PHROG	phrog_1066	NA	unknown function
UHGV-0186451_1	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-0186451_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0186451_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0186451_2	UniRef90	UniRef90_A0A1G5XL54	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0186451_2	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-0186451_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0186451_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0186451_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0186451_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0186451_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0186451_3	UniRef90	UniRef90_A0A1V5INC9	Phage portal protein	NA
UHGV-0186451_3	eggNOG-mapper	198094.BA_3786	Phage portal protein	NA
UHGV-0186451_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0186451_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0186451_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0186451_4	KOfam	K06904	NA	NA
UHGV-0186451_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0186451_4	UniRef90	UniRef90_A0A6N8H449	HK97 family phage prohead protease	NA
UHGV-0186451_4	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-0186451_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0186451_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0186451_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0186451_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0186451_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0186451_5	UniRef90	UniRef90_A0A3B8UB33	Phage major capsid protein	NA
UHGV-0186451_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0186451_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0186451_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0186451_7	PHROG	phrog_5223	neck protein	connector
UHGV-0186451_7	UniRef90	UniRef90_A0A4Y1WF08	NA	NA
UHGV-0186451_7	eggNOG-mapper	198094.BA_0470	NA	NA
UHGV-0186451_7	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0186451_8	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0186451_8	UniRef90	UniRef90_UPI00189BA764	phage head closure protein	NA
UHGV-0186451_8	eggNOG-mapper	1321814.HMPREF9089_00932	NA	NA
UHGV-0186451_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0186451_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0186451_9	UniRef90	UniRef90_A0A0J8Z1A5	Phage protein, HK97 gp10 family	NA
UHGV-0186451_9	eggNOG-mapper	457396.CSBG_01052	NA	NA
UHGV-0186451_9	Structural annotation	TIGR01725	NA	NA
UHGV-0186451_10	PHROG	phrog_957	head protein	head and packaging
UHGV-0186451_10	Structural annotation	PF11367, COG4722	NA	NA
UHGV-0186451_11	PHROG	phrog_885	major tail protein	tail
UHGV-0186451_11	UniRef90	UniRef90_A0A3D3W9F4	CBM_X2 domain-containing protein	NA
UHGV-0186451_11	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0186451_11	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0186451_12	eggNOG-mapper	457396.CSBG_01055	NA	NA
UHGV-0186451_14	PHROG	phrog_9483	tail length tape measure protein	tail
UHGV-0186451_14	UniRef90	UniRef90_A0A7M1PYL7	Phage tail tape measure protein	NA
UHGV-0186451_14	eggNOG-mapper	561177.ANHYDRO_01418	Phage tail tape measure protein, TP901 family	NA
UHGV-0186451_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0186451_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0186451_15	eggNOG-mapper	411468.CLOSCI_02410	NA	NA
UHGV-0186451_15	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0186451_16	PHROG	phrog_538	minor tail protein	tail
UHGV-0186451_16	eggNOG-mapper	1280671.AUJH01000012_gene3138	NA	NA
UHGV-0186451_16	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0186451_16	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0186451_18	PHROG	phrog_32779	NA	unknown function
UHGV-0186451_18	Pfam	PF00754	F5/8 type C domain	F5_F8_type_C
UHGV-0186451_18	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0186451_22	PHROG	phrog_1863	NA	unknown function
UHGV-0186451_22	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0186451_23	PHROG	phrog_443	holin	lysis
UHGV-0186451_23	UniRef90	UniRef90_A0A1I5VN65	Phage r1t holin	NA
UHGV-0186451_23	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0186451_23	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0186451_23	Structural annotation	PF16945	NA	NA
UHGV-0186451_24	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0186451_24	PHROG	phrog_670	endolysin	lysis
UHGV-0186451_24	UniRef90	UniRef90_A0A352SK06	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0186451_24	eggNOG-mapper	1042156.CXIVA_01560	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0186451_24	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0186451_24	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0186451_24	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0186451_25	PHROG	phrog_21718	NA	unknown function
UHGV-0186451_25	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0186451_27	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0186451_28	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0186451_33	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0186451_33	eggNOG-mapper	411483.FAEPRAA2165_01932	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0186451_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0186451_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0186451_34	KOfam	K14059	int; integrase	NA
UHGV-0186451_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0186451_34	UniRef90	UniRef90_R6MT37	Integrase family protein	NA
UHGV-0186451_34	eggNOG-mapper	411473.RUMCAL_01506	Belongs to the 'phage' integrase family	NA
UHGV-0186451_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0186451_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0186451_34	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0186451_35	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0186451_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0186451_35	UniRef90	UniRef90_UPI001D098286	helix-turn-helix domain-containing protein	NA
UHGV-0186451_35	eggNOG-mapper	658086.HMPREF0994_01720	Helix-turn-helix XRE-family like proteins	NA
UHGV-0186451_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0186451_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0186451_35	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0186451_36	UniRef90	UniRef90_UPI001D063892	helix-turn-helix transcriptional regulator	NA
UHGV-0186451_36	eggNOG-mapper	1226325.HMPREF1548_00560	NA	NA
UHGV-0186451_36	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0186451_36	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0186451_42	PHROG	phrog_6058	NA	unknown function
UHGV-0186451_42	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0186451_42	eggNOG-mapper	1460635.JCM19038_3443	NA	NA
UHGV-0186451_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0186451_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0186451_44	UniRef90	UniRef90_A0A3A9GAX1	Single-stranded DNA-binding protein	NA
UHGV-0186451_44	eggNOG-mapper	1235790.C805_03410	Single-stranded DNA-binding protein	NA
UHGV-0186451_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0186451_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0186451_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0186451_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0186451_44	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0186451_45	PHROG	phrog_4433	NA	unknown function
UHGV-0186451_45	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0186451_45	COG	COG5164	Transcription elongation factor SPT5	NA