UHGV-0186457

Genome information

Genome length 33,723 bps

CDS count 58

Completeness 95.90% (high-quality)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-0186457
vOTU ID	vOTU-011185
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596895
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.38
Jumbo phage	No

Genome content
Genome length	33,723 bps
GC content	52.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	90.95%
Average CDS length	531.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0186457_1	PHROG	phrog_13845	NA	unknown function
UHGV-0186457_1	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0186457_1	Structural annotation	PF05119, COG3747	NA	NA
UHGV-0186457_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0186457_2	UniRef90	UniRef90_A0A174HN48	Phage terminase-like protein, large subunit	NA
UHGV-0186457_2	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0186457_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0186457_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0186457_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0186457_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0186457_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0186457_3	UniRef90	UniRef90_A0A7X7AAU2	Phage portal protein	NA
UHGV-0186457_3	eggNOG-mapper	411470.RUMGNA_02063	Phage portal protein	NA
UHGV-0186457_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0186457_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0186457_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0186457_4	KOfam	K06904	NA	NA
UHGV-0186457_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0186457_4	UniRef90	UniRef90_UPI000F63D5D1	HK97 family phage prohead protease	NA
UHGV-0186457_4	eggNOG-mapper	1203606.HMPREF1526_01338	Caudovirus prohead serine protease	NA
UHGV-0186457_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0186457_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0186457_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0186457_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0186457_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0186457_5	UniRef90	UniRef90_A0A6N8H4E3	Phage major capsid protein	NA
UHGV-0186457_5	eggNOG-mapper	1297617.JPJD01000020_gene308	Phage capsid family	NA
UHGV-0186457_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0186457_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0186457_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0186457_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0186457_6	PHROG	phrog_5223	neck protein	connector
UHGV-0186457_6	UniRef90	UniRef90_UPI000C06DEDD	head-tail connector protein	NA
UHGV-0186457_6	eggNOG-mapper	1203606.HMPREF1526_00977	NA	NA
UHGV-0186457_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0186457_7	UniRef90	UniRef90_A0A6N9P9M6	Phage head-tail adapter protein	NA
UHGV-0186457_7	eggNOG-mapper	573061.Clocel_2434	head-tail adaptor	NA
UHGV-0186457_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0186457_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0186457_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0186457_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0186457_8	PHROG	phrog_78	tail terminator	connector
UHGV-0186457_8	eggNOG-mapper	1234664.AMRO01000024_gene1813	NA	NA
UHGV-0186457_8	Structural annotation	PF05657	NA	NA
UHGV-0186457_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0186457_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0186457_9	Structural annotation	TIGR01725	NA	NA
UHGV-0186457_10	PHROG	phrog_88	major tail protein	tail
UHGV-0186457_10	UniRef90	UniRef90_N1ZV08	Phi13 family phage major tail protein	NA
UHGV-0186457_10	eggNOG-mapper	97139.C824_05965	NA	NA
UHGV-0186457_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0186457_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0186457_11	Structural annotation	PF11836	NA	NA
UHGV-0186457_12	PHROG	phrog_33680	NA	unknown function
UHGV-0186457_12	UniRef90	UniRef90_A0A231NVG0	Phage tail protein	NA
UHGV-0186457_12	eggNOG-mapper	498761.HM1_2969	nuclear chromosome segregation	NA
UHGV-0186457_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0186457_12	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0186457_13	PHROG	phrog_10519	virion structural protein	head and packaging
UHGV-0186457_13	UniRef90	UniRef90_A0A428N2K2	Fibronectin type-III domain-containing protein	NA
UHGV-0186457_13	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0186457_13	Structural annotation	PF19077, PF06199, PF16794, PF08329, MF_04116, NF040520, COG3401, COG3499	NA	NA
UHGV-0186457_14	PHROG	phrog_26795	NA	unknown function
UHGV-0186457_14	eggNOG-mapper	1382315.JPOI01000001_gene271	NA	NA
UHGV-0186457_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0186457_20	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0186457_20	PHROG	phrog_329	minor tail protein	tail
UHGV-0186457_20	UniRef90	UniRef90_A0A2V2EEK9	NlpC/P60 domain-containing protein	NA
UHGV-0186457_20	eggNOG-mapper	755731.Clo1100_1179	cysteine-type peptidase activity	NA
UHGV-0186457_20	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0186457_20	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0186457_20	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0186457_20	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0186457_21	UniRef90	UniRef90_UPI001E4D989F	CTP synthase	NA
UHGV-0186457_21	eggNOG-mapper	552396.HMPREF0863_01650	NA	NA
UHGV-0186457_22	eggNOG-mapper	394503.Ccel_1297	NA	NA
UHGV-0186457_24	eggNOG-mapper	1384065.JAGS01000001_gene3279	Plasmid pRiA4b ORF-3-like protein	NA
UHGV-0186457_24	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0186457_24	Structural annotation	PF13384, NF040595	NA	NA
UHGV-0186457_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0186457_26	Structural annotation	PF21291, TIGR02607, COG3093	NA	NA
UHGV-0186457_27	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-0186457_29	PHROG	phrog_16490	NA	unknown function
UHGV-0186457_30	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0186457_32	KOfam	K14059	int; integrase	NA
UHGV-0186457_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0186457_32	UniRef90	UniRef90_UPI001C0F402D	site-specific integrase	NA
UHGV-0186457_32	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0186457_32	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0186457_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0186457_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0186457_32	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0186457_33	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0186457_33	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0186457_33	UniRef90	UniRef90_UPI0009BC4B95	exonuclease	NA
UHGV-0186457_33	eggNOG-mapper	545694.TREPR_3623	EXOIII	NA
UHGV-0186457_33	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0186457_33	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0186457_33	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0186457_33	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0186457_33	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0186457_34	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0186457_34	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0186457_35	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0186457_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0186457_35	UniRef90	UniRef90_A0A417K795	XRE family transcriptional regulator	NA
UHGV-0186457_35	eggNOG-mapper	1122173.AXVL01000018_gene460	Helix-turn-helix XRE-family like proteins	NA
UHGV-0186457_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0186457_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0186457_36	UniRef90	UniRef90_U7UMW3	Transcriptional regulator, Fis family	NA
UHGV-0186457_36	eggNOG-mapper	1111454.HMPREF1250_1031	NA	NA
UHGV-0186457_36	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0186457_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0186457_37	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0186457_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0186457_37	Structural annotation	TIGR01725	NA	NA
UHGV-0186457_41	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0186457_41	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0186457_44	PHROG	phrog_15768	NA	unknown function
UHGV-0186457_44	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0186457_44	eggNOG-mapper	1125725.HMPREF1325_1315	NA	NA
UHGV-0186457_44	Pfam	PF19808	NA	DUF6291
UHGV-0186457_44	Structural annotation	PF19808	NA	NA
UHGV-0186457_46	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0186457_46	UniRef90	UniRef90_A0A1Y4A1W6	HNH endonuclease	NA
UHGV-0186457_46	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0186457_46	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0186457_46	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0186457_46	Structural annotation	COG1403	NA	NA
UHGV-0186457_47	PHROG	phrog_824	NA	unknown function
UHGV-0186457_47	UniRef90	UniRef90_A0A6N8GXS9	VRR-NUC domain-containing protein	NA
UHGV-0186457_47	eggNOG-mapper	642492.Clole_0728	VRR-NUC domain	NA
UHGV-0186457_47	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0186457_55	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0186457_55	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0186457_56	PHROG	phrog_21498	NA	unknown function
UHGV-0186457_56	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0186457_56	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-0186457_56	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0186457_56	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0186457_58	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0186457_58	UniRef90	UniRef90_R6M5E4	Prophage LambdaBa04 GP54	NA
UHGV-0186457_58	eggNOG-mapper	573061.Clocel_2442	HNH endonuclease	NA
UHGV-0186457_58	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0186457_58	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA