UHGV-0186460

Genome information

Genome length 31,789 bps

CDS count 53

Completeness 71.29% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0186460
vOTU ID	vOTU-029614
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596898
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.87
Jumbo phage	No

Genome content
Genome length	31,789 bps
GC content	54.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	89.52%
Average CDS length	539.77 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0186460_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0186460_2	PHROG	phrog_10250	NA	unknown function
UHGV-0186460_2	UniRef90	UniRef90_UPI0012DD14DE	PBSX family phage terminase large subunit	NA
UHGV-0186460_2	eggNOG-mapper	742738.HMPREF9460_02505	Terminase-like family	NA
UHGV-0186460_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0186460_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0186460_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0186460_2	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0186460_3	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0186460_3	UniRef90	UniRef90_A0A8F8QRC5	Transposase	NA
UHGV-0186460_3	eggNOG-mapper	748224.HMPREF9436_03342	transposase activity	NA
UHGV-0186460_3	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0186460_4	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0186460_4	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0186460_4	UniRef90	UniRef90_R5AIZ8	Methyltransferase	NA
UHGV-0186460_4	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0186460_4	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0186460_4	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0186460_4	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0186460_4	COG	COG0863	DNA modification methylase	NA
UHGV-0186460_4	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0186460_5	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0186460_6	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0186460_6	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0186460_6	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0186460_6	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0186460_6	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0186460_6	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0186460_6	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0186460_7	PHROG	phrog_3136	NA	unknown function
UHGV-0186460_7	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0186460_7	eggNOG-mapper	1007096.BAGW01000031_gene120	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0186460_7	Pfam	PF04266	ASCH domain	ASCH
UHGV-0186460_7	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0186460_7	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0186460_10	PHROG	phrog_3253	NA	unknown function
UHGV-0186460_10	UniRef90	UniRef90_UPI001C032A7B	resolvase	NA
UHGV-0186460_10	Structural annotation	PF18618	NA	NA
UHGV-0186460_12	PHROG	phrog_6568	NA	unknown function
UHGV-0186460_12	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0186460_13	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0186460_13	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0186460_13	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0186460_13	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0186460_13	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0186460_13	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0186460_13	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0186460_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0186460_13	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0186460_14	Structural annotation	PF11417	NA	NA
UHGV-0186460_15	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0186460_15	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0186460_15	UniRef90	UniRef90_A0A3E2UDK7	DnaD domain protein	NA
UHGV-0186460_15	eggNOG-mapper	1111454.HMPREF1250_0280	NA	NA
UHGV-0186460_15	Pfam	PF19808	NA	DUF6291
UHGV-0186460_15	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0186460_15	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0186460_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0186460_15	Structural annotation	PF19808	NA	NA
UHGV-0186460_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0186460_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0186460_16	UniRef90	UniRef90_UPI001C00AA91	single-stranded DNA-binding protein	NA
UHGV-0186460_16	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0186460_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0186460_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0186460_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0186460_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0186460_16	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0186460_17	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0186460_17	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-0186460_17	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0186460_17	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0186460_19	Structural annotation	PF14120	NA	NA
UHGV-0186460_21	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0186460_22	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0186460_22	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0186460_23	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0186460_23	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0186460_23	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0186460_23	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0186460_23	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0186460_23	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0186460_23	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0186460_23	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0186460_23	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0186460_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0186460_25	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0186460_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0186460_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0186460_25	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0186460_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0186460_26	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0186460_29	PHROG	phrog_1847	NA	unknown function
UHGV-0186460_29	UniRef90	UniRef90_UPI0012DCCDD6	NA	NA
UHGV-0186460_29	eggNOG-mapper	718252.FP2_06880	NA	NA
UHGV-0186460_29	Pfam	PF13250	NA	DUF4041
UHGV-0186460_29	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0186460_29	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0186460_29	Structural annotation	PF13250, PF19824	NA	NA
UHGV-0186460_32	UniRef90	UniRef90_UPI0018CC79B4	helix-turn-helix domain-containing protein	NA
UHGV-0186460_32	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0186460_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0186460_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0186460_32	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0186460_33	KOfam	K14059	int; integrase	NA
UHGV-0186460_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0186460_33	UniRef90	UniRef90_UPI0012DD7FDB	site-specific integrase	NA
UHGV-0186460_33	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0186460_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0186460_33	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0186460_33	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0186460_35	UniRef90	UniRef90_A0A345BNU6	Spore surface glycoprotein	NA
UHGV-0186460_35	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0186460_36	PHROG	phrog_16490	NA	unknown function
UHGV-0186460_36	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0186460_37	PHROG	phrog_22984	NA	unknown function
UHGV-0186460_40	PHROG	phrog_1454	NA	unknown function
UHGV-0186460_40	eggNOG-mapper	742740.HMPREF9474_04325	NA	NA
UHGV-0186460_41	PHROG	phrog_15303	NA	unknown function
UHGV-0186460_42	PHROG	phrog_4105	NA	unknown function
UHGV-0186460_42	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0186460_43	KOfam	K07273	acm; lysozyme	NA
UHGV-0186460_43	PHROG	phrog_291	endolysin	lysis
UHGV-0186460_43	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0186460_43	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0186460_43	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0186460_43	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0186460_43	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0186460_44	Structural annotation	NF040910	NA	NA
UHGV-0186460_46	PHROG	phrog_30508	NA	unknown function
UHGV-0186460_47	PHROG	phrog_521	tail protein	tail
UHGV-0186460_47	UniRef90	UniRef90_UPI0012DF3082	NA	NA
UHGV-0186460_47	eggNOG-mapper	742738.HMPREF9460_02532	NA	NA
UHGV-0186460_47	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0186460_47	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0186460_47	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0186460_48	PHROG	phrog_6	baseplate protein	tail
UHGV-0186460_48	UniRef90	UniRef90_UPI0012DC9D54	baseplate J/gp47 family protein	NA
UHGV-0186460_48	eggNOG-mapper	742738.HMPREF9460_02531	Baseplate J-like protein	NA
UHGV-0186460_48	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0186460_48	COG	COG3299	NA	NA
UHGV-0186460_48	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0186460_49	PHROG	phrog_120	baseplate protein	tail
UHGV-0186460_49	UniRef90	UniRef90_UPI0012DC353B	NA	NA
UHGV-0186460_49	eggNOG-mapper	742738.HMPREF9460_02530	NA	NA
UHGV-0186460_49	Pfam	PF10934	NA	DUF2634
UHGV-0186460_49	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0186460_49	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0186460_50	PHROG	phrog_579	NA	unknown function
UHGV-0186460_50	UniRef90	UniRef90_UPI0012DC9308	NA	NA
UHGV-0186460_50	Pfam	PF10844	NA	DUF2577
UHGV-0186460_50	Structural annotation	PF10844	NA	NA
UHGV-0186460_51	PHROG	phrog_400	tail protein	tail
UHGV-0186460_51	eggNOG-mapper	742738.HMPREF9460_02528	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0186460_51	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0186460_51	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0186460_52	PHROG	phrog_380	endolysin	lysis
UHGV-0186460_52	UniRef90	UniRef90_A0A212J4L5	Putative Phage-like element PBSX protein XkdP	NA
UHGV-0186460_52	eggNOG-mapper	742738.HMPREF9460_02527	LysM domain	NA
UHGV-0186460_52	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0186460_52	Structural annotation	PF21821, PF14603, MF_00613, TIGR02126, COG3499, COG3103	NA	NA
UHGV-0186460_53	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0186460_53	UniRef90	UniRef90_UPI0012DBDA0E	tape measure protein	NA
UHGV-0186460_53	eggNOG-mapper	1408437.JNJN01000045_gene581	tape measure	NA
UHGV-0186460_53	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0186460_53	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0186460_53	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0186460_53	Structural annotation	PF20155, TIGR02675, COG5281	NA	NA