UHGV-0186590

Genome information

Genome length 19,251 bps

CDS count 32

Completeness 100.00% (complete)

geNomad score 0.9672

Prediction confidence Confident

Genome information
Genome ID	UHGV-0186590
vOTU ID	vOTU-046955
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596369
BioSample	SAMN09781786
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	ITR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9672
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.4
Jumbo phage	No

Genome content
Genome length	19,251 bps
GC content	24.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	92.60%
Average CDS length	558.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0186590_3	PHROG	phrog_21026	NA	unknown function
UHGV-0186590_7	Structural annotation	PF13670	NA	NA
UHGV-0186590_10	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0186590_10	UniRef90	UniRef90_A0A1C5STJ7	MazG domain-containing protein	NA
UHGV-0186590_10	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0186590_10	Structural annotation	PF12643, COG5420	NA	NA
UHGV-0186590_12	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0186590_12	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0186590_12	UniRef90	UniRef90_A0A385IS33	DNA-directed DNA polymerase	NA
UHGV-0186590_12	eggNOG-mapper	338473.A6XAD2_9CAUD	nucleotide binding	NA
UHGV-0186590_12	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0186590_12	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0186590_13	Pfam	PF07508	Recombinase	Recombinase
UHGV-0186590_13	Structural annotation	PF07508, TIGR02937	NA	NA
UHGV-0186590_15	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0186590_15	UniRef90	UniRef90_I3PV25	Major head protein	NA
UHGV-0186590_15	eggNOG-mapper	1162304.I3PV25_9CAUD	viral capsid	NA
UHGV-0186590_15	Structural annotation	PF21703, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0186590_16	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0186590_16	PHROG	phrog_16615	peptidase	other
UHGV-0186590_16	UniRef90	UniRef90_UPI001BAEB0C3	lysozyme	NA
UHGV-0186590_16	eggNOG-mapper	1187894.I2E8W3_9CAUD	peptidoglycan catabolic process	NA
UHGV-0186590_16	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0186590_16	Structural annotation	PF01551, PF16838, MF_04110, NF040883, COG0739, COG3772	NA	NA
UHGV-0186590_17	PHROG	phrog_16740	tail protein	tail
UHGV-0186590_17	UniRef90	UniRef90_G9J3I0	Tail protein	NA
UHGV-0186590_17	eggNOG-mapper	1128071.G9J3I0_9CAUD	NA	NA
UHGV-0186590_17	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0186590_17	Structural annotation	PF20934	NA	NA
UHGV-0186590_18	PHROG	phrog_2038	upper collar connector	connector
UHGV-0186590_18	UniRef90	UniRef90_G9J3I3	Connector	NA
UHGV-0186590_18	eggNOG-mapper	1128071.G9J3I3_9CAUD	Phage Connector (GP10)	NA
UHGV-0186590_18	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0186590_18	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0186590_19	PHROG	phrog_5472	lower collar	tail
UHGV-0186590_19	UniRef90	UniRef90_G9J3I4	Lower collar protein	NA
UHGV-0186590_19	eggNOG-mapper	1162304.I3PV20_9CAUD	NA	NA
UHGV-0186590_20	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0186590_20	PHROG	phrog_11541	NA	unknown function
UHGV-0186590_20	UniRef90	UniRef90_UPI00073E2A65	SGNH/GDSL hydrolase family protein	NA
UHGV-0186590_20	eggNOG-mapper	1423816.BACQ01000031_gene1331	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0186590_20	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0186590_20	Structural annotation	PF16255, NF007819, COG2845	NA	NA
UHGV-0186590_21	PHROG	phrog_17212	pre-neck appendage protein	connector
UHGV-0186590_22	PHROG	phrog_4898	holin	lysis
UHGV-0186590_23	PHROG	phrog_2150	terminase	head and packaging
UHGV-0186590_23	UniRef90	UniRef90_A0A8D6UBB2	Encapsidation protein	NA
UHGV-0186590_23	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0186590_23	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0186590_23	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0186590_24	Structural annotation	PF02403, MF_00308, NF038178, COG1730	NA	NA
UHGV-0186590_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0186590_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0186590_25	UniRef90	UniRef90_A0A3E0WQD3	Single-stranded DNA-binding protein	NA
UHGV-0186590_25	eggNOG-mapper	1121033.AUCF01000001_gene2465	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0186590_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0186590_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0186590_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0186590_28	Pfam	PF20111	NA	DUF6501
UHGV-0186590_28	Structural annotation	PF20111	NA	NA