UHGV-0186651

Genome information

vOTU vOTU-019908

Genome length 22,385 bps

CDS count 29

Completeness 55.64% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0186651
vOTU ID	vOTU-019908
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2737723_a1_ct97195_vs1@Siphoviridae__sp._ctCDM1
BioSample	SAMEA2737723
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.34
Jumbo phage	No

Genome content
Genome length	22,385 bps
GC content	38.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	92.95%
Average CDS length	720.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0186651_1	PHROG	phrog_3882	NA	unknown function
UHGV-0186651_2	PHROG	phrog_8955	NA	unknown function
UHGV-0186651_3	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0186651_3	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0186651_3	UniRef90	UniRef90_J6Z1D2	Putative terminase small subunit	NA
UHGV-0186651_3	eggNOG-mapper	565664.EFXG_01157	Terminase small subunit	NA
UHGV-0186651_3	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0186651_3	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0186651_3	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0186651_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0186651_4	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0186651_4	UniRef90	UniRef90_A0A022N9V5	Terminase	NA
UHGV-0186651_4	eggNOG-mapper	565664.EFXG_01158	Terminase RNAseH like domain	NA
UHGV-0186651_4	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0186651_4	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0186651_4	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0186651_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0186651_4	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0186651_4	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0186651_5	PHROG	phrog_64	portal protein	head and packaging
UHGV-0186651_5	UniRef90	UniRef90_A0A7U8IK40	Phage portal protein	NA
UHGV-0186651_5	eggNOG-mapper	565664.EFXG_01159	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0186651_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0186651_5	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0186651_5	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0186651_6	PHROG	phrog_8208	NA	unknown function
UHGV-0186651_7	PHROG	phrog_419	NA	unknown function
UHGV-0186651_7	UniRef90	UniRef90_A0A7U8FU65	Prophage Lp2 protein 33	NA
UHGV-0186651_7	eggNOG-mapper	565664.EFXG_01161	NA	NA
UHGV-0186651_7	Structural annotation	PF14083	NA	NA
UHGV-0186651_8	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0186651_8	UniRef90	UniRef90_A0A7Z0M1B3	Minor capsid protein	NA
UHGV-0186651_8	eggNOG-mapper	565664.EFXG_01162	Phage Mu protein F like protein	NA
UHGV-0186651_8	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0186651_8	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0186651_8	COG	COG2369	NA	NA
UHGV-0186651_8	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0186651_9	PHROG	phrog_8265	NA	unknown function
UHGV-0186651_12	PHROG	phrog_918	NA	unknown function
UHGV-0186651_12	UniRef90	UniRef90_UPI001E2DBFC8	NA	NA
UHGV-0186651_12	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0186651_12	Pfam	PF19791	NA	DUF6275
UHGV-0186651_12	Structural annotation	PF19791	NA	NA
UHGV-0186651_13	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0186651_13	UniRef90	UniRef90_UPI00032EBCA5	NA	NA
UHGV-0186651_13	eggNOG-mapper	565664.EFXG_01165	NA	NA
UHGV-0186651_13	Pfam	PF14265	NA	DUF4355
UHGV-0186651_13	Structural annotation	PF14265	NA	NA
UHGV-0186651_14	PHROG	phrog_909	major head protein	head and packaging
UHGV-0186651_14	UniRef90	UniRef90_A0A7U8FVR7	NA	NA
UHGV-0186651_14	eggNOG-mapper	565664.EFXG_01166	NA	NA
UHGV-0186651_15	PHROG	phrog_29	major head protein	head and packaging
UHGV-0186651_15	UniRef90	UniRef90_A0A7U8FUB5	NA	NA
UHGV-0186651_15	eggNOG-mapper	565664.EFXG_01167	Phage major capsid protein E	NA
UHGV-0186651_15	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0186651_15	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0186651_16	PHROG	phrog_933	NA	unknown function
UHGV-0186651_17	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0186651_17	UniRef90	UniRef90_UPI001921F8BF	phage head-tail connector protein	NA
UHGV-0186651_17	eggNOG-mapper	565664.EFXG_01169	Phage gp6-like head-tail connector protein	NA
UHGV-0186651_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0186651_17	Structural annotation	PF05135	NA	NA
UHGV-0186651_18	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0186651_18	UniRef90	UniRef90_A0A0V8CX26	NA	NA
UHGV-0186651_18	eggNOG-mapper	565664.EFXG_01170	NA	NA
UHGV-0186651_18	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0186651_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0186651_19	UniRef90	UniRef90_A0A828QE67	Phage protein, HK97 gp10 family	NA
UHGV-0186651_19	eggNOG-mapper	565664.EFXG_01171	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0186651_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0186651_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0186651_19	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0186651_20	PHROG	phrog_176	tail terminator	connector
UHGV-0186651_20	UniRef90	UniRef90_UPI000A339243	phage capsid protein	NA
UHGV-0186651_20	eggNOG-mapper	565664.EFXG_01172	NA	NA
UHGV-0186651_20	Structural annotation	PF11367	NA	NA
UHGV-0186651_21	PHROG	phrog_238	major tail protein	tail
UHGV-0186651_21	UniRef90	UniRef90_A0A0M2B0N7	Phage major tail protein, TP901-1 family	NA
UHGV-0186651_21	eggNOG-mapper	565664.EFXG_01173	Phage tail tube protein	NA
UHGV-0186651_21	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0186651_21	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0186651_21	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0186651_22	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0186651_22	UniRef90	UniRef90_UPI001A8DA6DF	tail assembly chaperone	NA
UHGV-0186651_22	eggNOG-mapper	565664.EFXG_01174	Phage tail assembly chaperone protein, TAC	NA
UHGV-0186651_22	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0186651_22	Structural annotation	PF12363	NA	NA
UHGV-0186651_23	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0186651_23	UniRef90	UniRef90_A0A7U8IL94	NA	NA
UHGV-0186651_23	eggNOG-mapper	565664.EFXG_01175	NA	NA
UHGV-0186651_24	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0186651_24	UniRef90	UniRef90_A0A829A1W7	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0186651_24	eggNOG-mapper	565664.EFXG_01176	Phage tail tape measure protein, TP901 family	NA
UHGV-0186651_24	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0186651_24	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0186651_24	COG	COG5283	Phage-related tail protein	NA
UHGV-0186651_24	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0186651_25	PHROG	phrog_5163	minor tail protein	tail
UHGV-0186651_25	UniRef90	UniRef90_A0A0M2B121	Phage tail component protein	NA
UHGV-0186651_25	eggNOG-mapper	565664.EFXG_01177	Phage tail protein	NA
UHGV-0186651_25	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0186651_25	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0186651_25	COG	COG4722	Phage-related protein YomH	NA
UHGV-0186651_25	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0186651_26	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0186651_26	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0186651_26	UniRef90	UniRef90_A0A6N3BG50	Murein DD-endopeptidase MepM	NA
UHGV-0186651_26	eggNOG-mapper	565664.EFXG_01178	heme binding	NA
UHGV-0186651_26	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0186651_26	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0186651_26	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0186651_26	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0186651_26	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0186651_26	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-0186651_27	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0186651_27	PHROG	phrog_7158	NA	unknown function
UHGV-0186651_27	UniRef90	UniRef90_UPI00100FAC5D	BppU family phage baseplate upper protein	NA
UHGV-0186651_27	eggNOG-mapper	565664.EFXG_01759	NA	NA
UHGV-0186651_27	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0186651_27	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0186651_27	Structural annotation	PF10651, PF14582, MF_00905, NF008359, COG1409	NA	NA
UHGV-0186651_28	PHROG	phrog_11663	minor head protein	head and packaging
UHGV-0186651_28	UniRef90	UniRef90_C9B751	Predicted protein	NA
UHGV-0186651_28	eggNOG-mapper	565664.EFXG_01758	NA	NA
UHGV-0186651_29	PHROG	phrog_10054	NA	unknown function
UHGV-0186651_29	UniRef90	UniRef90_UPI00115C3767	BppU family phage baseplate upper protein	NA
UHGV-0186651_29	eggNOG-mapper	1158604.I591_00541	InterPro IPR018913 Domain of	NA
UHGV-0186651_29	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0186651_29	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3