UHGV-0186675

Genome information

Genome length 32,548 bps

CDS count 56

Completeness 99.02% (high-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0186675
vOTU ID	vOTU-011190
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596248
BioSample	SAMN09781713
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.02% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.94
Jumbo phage	No

Genome content
Genome length	32,548 bps
GC content	49.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	94.15%
Average CDS length	552.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0186675_1	PHROG	phrog_21498	NA	unknown function
UHGV-0186675_1	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0186675_1	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0186675_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0186675_1	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0186675_2	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0186675_2	UniRef90	UniRef90_A0A2V2GLL9	Metallophos_2 domain-containing protein	NA
UHGV-0186675_2	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-0186675_2	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0186675_2	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0186675_2	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0186675_5	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0186675_5	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0186675_5	Pfam	PF07374	NA	DUF1492
UHGV-0186675_5	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0186675_6	eggNOG-mapper	657322.FPR_23450	NA	NA
UHGV-0186675_7	PHROG	phrog_38832	NA	unknown function
UHGV-0186675_7	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0186675_7	Structural annotation	PF11717	NA	NA
UHGV-0186675_8	PHROG	phrog_3777	NA	unknown function
UHGV-0186675_8	UniRef90	UniRef90_A0A417F883	NA	NA
UHGV-0186675_8	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0186675_8	Pfam	PF12957	NA	DUF3846
UHGV-0186675_8	Structural annotation	PF12957	NA	NA
UHGV-0186675_11	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0186675_11	Structural annotation	TIGR04381	NA	NA
UHGV-0186675_13	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0186675_13	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0186675_13	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0186675_13	eggNOG-mapper	477974.Daud_0813	NA	NA
UHGV-0186675_13	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0186675_13	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0186675_14	PHROG	phrog_9804	NA	unknown function
UHGV-0186675_14	UniRef90	UniRef90_UPI001E312ACC	replicative helicase loader/inhibitor	NA
UHGV-0186675_14	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0186675_14	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0186675_14	Structural annotation	PF11417	NA	NA
UHGV-0186675_15	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0186675_15	UniRef90	UniRef90_A0A8B3R1H0	Phage replication protein	NA
UHGV-0186675_15	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0186675_15	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0186675_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0186675_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0186675_16	UniRef90	UniRef90_UPI001E2A5A6F	single-stranded DNA-binding protein	NA
UHGV-0186675_16	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0186675_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0186675_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0186675_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0186675_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0186675_16	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0186675_17	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0186675_17	UniRef90	UniRef90_UPI0006A41431	DNA cytosine methyltransferase	NA
UHGV-0186675_17	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0186675_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0186675_17	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0186675_18	PHROG	phrog_7566	NA	unknown function
UHGV-0186675_18	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0186675_19	PHROG	phrog_1389	NA	unknown function
UHGV-0186675_19	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-0186675_19	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0186675_20	PHROG	phrog_14970	NA	unknown function
UHGV-0186675_20	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0186675_20	eggNOG-mapper	428127.EUBDOL_01248	double-strand break repair protein	NA
UHGV-0186675_20	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0186675_20	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0186675_20	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0186675_22	PHROG	phrog_4433	NA	unknown function
UHGV-0186675_22	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-0186675_22	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0186675_22	Structural annotation	NF007410	NA	NA
UHGV-0186675_25	Structural annotation	NF041588	NA	NA
UHGV-0186675_26	UniRef90	UniRef90_UPI001E431871	helix-turn-helix transcriptional regulator	NA
UHGV-0186675_26	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0186675_26	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0186675_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0186675_29	UniRef90	UniRef90_UPI00085C4C2C	helix-turn-helix domain-containing protein	NA
UHGV-0186675_29	eggNOG-mapper	1304866.K413DRAFT_3003	addiction module antidote protein HigA	NA
UHGV-0186675_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0186675_29	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0186675_30	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0186675_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0186675_30	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-0186675_30	eggNOG-mapper	1027396.LMOSA_9200	Transcriptional	NA
UHGV-0186675_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0186675_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0186675_30	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0186675_31	UniRef90	UniRef90_UPI001E2EC555	helix-turn-helix domain-containing protein	NA
UHGV-0186675_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0186675_31	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0186675_31	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0186675_32	Structural annotation	PF08797, PF01668, TIGR00086, COG0691	NA	NA
UHGV-0186675_33	KOfam	K14059	int; integrase	NA
UHGV-0186675_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0186675_33	UniRef90	UniRef90_UPI001E298856	site-specific integrase	NA
UHGV-0186675_33	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0186675_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0186675_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0186675_33	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0186675_34	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0186675_34	PHROG	phrog_435	endolysin	lysis
UHGV-0186675_34	UniRef90	UniRef90_A0A2V2GRI9	MurNAc-LAA domain-containing protein	NA
UHGV-0186675_34	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0186675_34	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0186675_34	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0186675_34	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0186675_35	eggNOG-mapper	1347392.CCEZ01000017_gene1158	NA	NA
UHGV-0186675_36	PHROG	phrog_1863	NA	unknown function
UHGV-0186675_36	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0186675_37	PHROG	phrog_2310	NA	unknown function
UHGV-0186675_37	eggNOG-mapper	1415774.U728_3409	NA	NA
UHGV-0186675_40	PHROG	phrog_29409	NA	unknown function
UHGV-0186675_40	UniRef90	UniRef90_A0A2V2GQ35	Isoaspartyl peptidase	NA
UHGV-0186675_41	PHROG	phrog_37900	NA	unknown function
UHGV-0186675_41	UniRef90	UniRef90_A0A2V2GLK0	NA	NA
UHGV-0186675_41	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0186675_41	Pfam	PF19789	NA	DUF6273
UHGV-0186675_41	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0186675_41	Structural annotation	PF19789, PF03785	NA	NA
UHGV-0186675_42	PHROG	phrog_5811	NA	unknown function
UHGV-0186675_42	eggNOG-mapper	665956.HMPREF1032_00105	NA	NA
UHGV-0186675_42	Structural annotation	PF20747, TIGR03353	NA	NA
UHGV-0186675_43	PHROG	phrog_7064	tail protein	tail
UHGV-0186675_43	eggNOG-mapper	665956.HMPREF1032_00106	NA	NA
UHGV-0186675_43	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0186675_44	PHROG	phrog_20385	minor tail protein	tail
UHGV-0186675_44	UniRef90	UniRef90_UPI001C013719	phage baseplate protein	NA
UHGV-0186675_44	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-0186675_44	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0186675_45	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0186675_45	UniRef90	UniRef90_A0A2V2GLB5	Phage tail tape measure protein	NA
UHGV-0186675_45	eggNOG-mapper	1033743.CAES01000020_gene3130	Phage-related minor tail protein	NA
UHGV-0186675_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0186675_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0186675_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0186675_45	Structural annotation	COG5280	NA	NA
UHGV-0186675_46	PHROG	phrog_709	NA	unknown function
UHGV-0186675_46	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0186675_46	Structural annotation	PF19591	NA	NA
UHGV-0186675_47	PHROG	phrog_88	major tail protein	tail
UHGV-0186675_47	UniRef90	UniRef90_A0A2V2GLL2	Phage tail protein	NA
UHGV-0186675_47	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-0186675_47	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0186675_47	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0186675_48	PHROG	phrog_78	tail terminator	connector
UHGV-0186675_48	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0186675_48	eggNOG-mapper	1226322.HMPREF1545_00120	NA	NA
UHGV-0186675_48	Structural annotation	PF20765	NA	NA
UHGV-0186675_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0186675_49	UniRef90	UniRef90_UPI00073E355A	HK97 gp10 family phage protein	NA
UHGV-0186675_49	eggNOG-mapper	665956.HMPREF1032_02261	NA	NA
UHGV-0186675_49	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0186675_49	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0186675_50	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0186675_50	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-0186675_50	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-0186675_50	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0186675_50	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0186675_51	PHROG	phrog_2550	NA	unknown function
UHGV-0186675_51	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0186675_51	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0186675_51	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0186675_52	PHROG	phrog_10	major head protein	head and packaging
UHGV-0186675_52	UniRef90	UniRef90_A0A2V2GRA2	Phage major capsid protein	NA
UHGV-0186675_52	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0186675_52	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0186675_52	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0186675_52	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0186675_52	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0186675_52	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0186675_53	KOfam	K06904	NA	NA
UHGV-0186675_53	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0186675_53	UniRef90	UniRef90_A0A2V2GNJ3	HK97 family phage prohead protease	NA
UHGV-0186675_53	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0186675_53	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0186675_53	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0186675_53	COG	COG3740	Phage head maturation protease	NA
UHGV-0186675_53	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0186675_54	PHROG	phrog_12	portal protein	head and packaging
UHGV-0186675_54	UniRef90	UniRef90_A0A2V2GQD5	Phage portal protein	NA
UHGV-0186675_54	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0186675_54	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0186675_54	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0186675_54	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0186675_54	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0186675_55	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0186675_55	UniRef90	UniRef90_A0A2V2GQ67	Terminase	NA
UHGV-0186675_55	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0186675_55	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0186675_55	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0186675_55	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0186675_55	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0186675_56	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0186675_56	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0186675_56	eggNOG-mapper	1329516.JPST01000017_gene431	Phage terminase, small subunit	NA
UHGV-0186675_56	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0186675_56	COG	COG3747	Phage terminase, small subunit	NA