UHGV-0186871

Genome information

vOTU vOTU-019916

Genome length 27,106 bps

CDS count 37

Completeness 74.86% (medium-quality)

geNomad score 0.9451

Prediction confidence Confident

Genome information
Genome ID	UHGV-0186871
vOTU ID	vOTU-019916
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2580138_a1_ct26116_vs1@Siphoviridae__sp._ctvJv1
BioSample	SAMEA2580138
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9451
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.06
Jumbo phage	No

Genome content
Genome length	27,106 bps
GC content	53.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	94.23%
Average CDS length	693.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0186871_6	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0186871_6	UniRef90	UniRef90_C0W5T7	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0186871_6	eggNOG-mapper	935866.JAER01000006_gene3384	NA	NA
UHGV-0186871_7	PHROG	phrog_26098	NA	unknown function
UHGV-0186871_7	UniRef90	UniRef90_A0A2A9CZK3	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0186871_7	eggNOG-mapper	1454010.JEOE01000069_gene1508	NA	NA
UHGV-0186871_11	PHROG	phrog_8643	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0186871_11	UniRef90	UniRef90_UPI00165DEE12	DNA primase	NA
UHGV-0186871_11	eggNOG-mapper	1415166.NONO_c60680	Phage plasmid primase, P4 family domain protein	NA
UHGV-0186871_11	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0186871_11	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0186871_12	PHROG	phrog_226	minor tail protein	tail
UHGV-0186871_12	UniRef90	UniRef90_A0A899IZD5	Terminase small subunit	NA
UHGV-0186871_12	eggNOG-mapper	1348663.KCH_49450	NA	NA
UHGV-0186871_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0186871_13	UniRef90	UniRef90_A0A430JUG0	Terminase	NA
UHGV-0186871_13	eggNOG-mapper	591157.SSLG_02648	Terminase	NA
UHGV-0186871_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0186871_13	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0186871_14	PHROG	phrog_104	portal protein	head and packaging
UHGV-0186871_14	UniRef90	UniRef90_A0A8F2VUM9	Phage portal protein	NA
UHGV-0186871_14	eggNOG-mapper	1415166.NONO_c60710	NA	NA
UHGV-0186871_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0186871_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0186871_15	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-0186871_15	UniRef90	UniRef90_U1S0J5	CdiA_C domain-containing protein	NA
UHGV-0186871_15	eggNOG-mapper	591157.SSLG_02646	NA	NA
UHGV-0186871_17	PHROG	phrog_2592	head scaffolding protein	head and packaging
UHGV-0186871_17	UniRef90	UniRef90_W5TNY3	Putative bacteriophage protein	NA
UHGV-0186871_17	eggNOG-mapper	1278078.G419_25287	NA	NA
UHGV-0186871_18	PHROG	phrog_267	major head protein	head and packaging
UHGV-0186871_18	UniRef90	UniRef90_A0A2V4AKT2	P22 coat protein Gp5	NA
UHGV-0186871_18	eggNOG-mapper	1381751.JAJB01000050_gene145	P22 coat protein-protein 5 domain protein	NA
UHGV-0186871_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0186871_20	PHROG	phrog_2377	head-tail adaptor Ad1	connector
UHGV-0186871_20	UniRef90	UniRef90_W5TUL8	Putative bacteriophage protein	NA
UHGV-0186871_20	Structural annotation	TIGR02215	NA	NA
UHGV-0186871_21	PHROG	phrog_501	head closure Hc1	connector
UHGV-0186871_21	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0186871_22	PHROG	phrog_387	neck protein	connector
UHGV-0186871_23	PHROG	phrog_123	tail terminator	connector
UHGV-0186871_23	Structural annotation	PF16807	NA	NA
UHGV-0186871_24	PHROG	phrog_476	major tail protein	tail
UHGV-0186871_24	UniRef90	UniRef90_UPI0005435135	Ig-like domain-containing protein	NA
UHGV-0186871_24	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0186871_26	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0186871_26	PHROG	phrog_8927	tail length tape measure protein	tail
UHGV-0186871_26	UniRef90	UniRef90_UPI000FFE39B9	tape measure protein	NA
UHGV-0186871_26	eggNOG-mapper	1437610.BREU_1375	phage tail tape measure protein	NA
UHGV-0186871_26	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0186871_26	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0186871_26	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0186871_26	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0186871_26	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0186871_27	PHROG	phrog_5577	minor tail protein	tail
UHGV-0186871_27	UniRef90	UniRef90_A0A561EMX0	Tail protein	NA
UHGV-0186871_27	eggNOG-mapper	1463887.KL589968_gene7430	NA	NA
UHGV-0186871_27	COG	COG5283	Phage-related tail protein	NA
UHGV-0186871_28	PHROG	phrog_25212	minor tail protein	tail
UHGV-0186871_28	UniRef90	UniRef90_A0A0K2B6N1	PCQ3_53	NA
UHGV-0186871_28	eggNOG-mapper	67275.JOAP01000050_gene892	NA	NA
UHGV-0186871_29	PHROG	phrog_1885	minor tail protein	tail
UHGV-0186871_29	eggNOG-mapper	1156844.KB891852_gene3712	NA	NA
UHGV-0186871_34	PHROG	phrog_21825	endolysin	lysis
UHGV-0186871_34	UniRef90	UniRef90_A0A2J6NWN8	Endolysin	NA
UHGV-0186871_34	eggNOG-mapper	548479.HMPREF0573_11404	CHAP domain	NA
UHGV-0186871_34	Pfam	PF05257	CHAP domain	CHAP
UHGV-0186871_34	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0186871_34	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0186871_34	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-0186871_35	PHROG	phrog_6116	holin	lysis
UHGV-0186871_35	UniRef90	UniRef90_A0A5J6TU33	Membrane protein	NA
UHGV-0186871_35	eggNOG-mapper	1403948.Q618_VCMC00001G0576	NA	NA
UHGV-0186871_36	Pfam	PF10874	NA	DUF2746
UHGV-0186871_37	KOfam	K07483	K07483; transposase	NA
UHGV-0186871_37	UniRef90	UniRef90_W1TQB0	Transposase IS3/IS911 family protein	NA
UHGV-0186871_37	eggNOG-mapper	1403948.Q618_VCMC00001G1388	transposase activity	NA
UHGV-0186871_37	COG	COG2963	Transposase InsE and inactivated derivatives	NA