UHGV-0186990

Genome information

Genome length 31,469 bps

CDS count 57

Completeness 85.70% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0186990
vOTU ID	vOTU-029668
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596346
BioSample	SAMN09781786
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.5
Jumbo phage	No

Genome content
Genome length	31,469 bps
GC content	55.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.32%
Average CDS length	512.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0186990_1	PHROG	phrog_1066	NA	unknown function
UHGV-0186990_1	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0186990_1	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0186990_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0186990_2	UniRef90	UniRef90_A0A1Y3W5R1	Terminase	NA
UHGV-0186990_2	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0186990_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0186990_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0186990_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0186990_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0186990_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0186990_3	UniRef90	UniRef90_UPI001898FCCE	phage portal protein	NA
UHGV-0186990_3	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0186990_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0186990_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0186990_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0186990_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0186990_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0186990_4	UniRef90	UniRef90_A0A355BJ21	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0186990_4	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0186990_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0186990_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0186990_4	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0186990_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0186990_5	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-0186990_5	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0186990_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0186990_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0186990_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0186990_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0186990_6	PHROG	phrog_5223	neck protein	connector
UHGV-0186990_6	UniRef90	UniRef90_A0A6N8H2B4	DNA-packaging protein	NA
UHGV-0186990_6	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0186990_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0186990_7	UniRef90	UniRef90_A0A1F8UNT5	Phage head-tail adapter protein	NA
UHGV-0186990_7	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-0186990_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0186990_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0186990_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0186990_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0186990_8	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-0186990_8	Structural annotation	PF05657	NA	NA
UHGV-0186990_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0186990_9	Structural annotation	TIGR01725	NA	NA
UHGV-0186990_10	PHROG	phrog_88	major tail protein	tail
UHGV-0186990_10	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0186990_10	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0186990_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0186990_10	COG	COG5492	NA	NA
UHGV-0186990_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0186990_11	Structural annotation	PF11836	NA	NA
UHGV-0186990_12	KOfam	K10352	MYH9s; myosin heavy chain 9/10/11/14	NA
UHGV-0186990_12	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0186990_12	UniRef90	UniRef90_UPI001D1265F0	phage tail tape measure protein	NA
UHGV-0186990_12	eggNOG-mapper	742740.HMPREF9474_04296	Phage tail tape measure protein TP901	NA
UHGV-0186990_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0186990_12	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0186990_13	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0186990_13	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0186990_13	NCBIFam	NF033679.1	DNRLRE domain-containing protein	NA
UHGV-0186990_13	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0186990_14	PHROG	phrog_26795	NA	unknown function
UHGV-0186990_14	eggNOG-mapper	997296.PB1_16154	NA	NA
UHGV-0186990_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0186990_15	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0186990_16	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0186990_17	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0186990_18	PHROG	phrog_13589	NA	unknown function
UHGV-0186990_18	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0186990_19	PHROG	phrog_37900	NA	unknown function
UHGV-0186990_19	UniRef90	UniRef90_UPI00051B4A1C	NA	NA
UHGV-0186990_19	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0186990_19	Pfam	PF19789	NA	DUF6273
UHGV-0186990_19	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0186990_19	Structural annotation	PF19789, PF14686, NF040788, COG2512	NA	NA
UHGV-0186990_22	PHROG	phrog_937	hemolysin	other
UHGV-0186990_22	eggNOG-mapper	693746.OBV_19000	NA	NA
UHGV-0186990_24	PHROG	phrog_13256	NA	unknown function
UHGV-0186990_24	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0186990_25	UniRef90	UniRef90_A0A358M2Y7	PG_binding_1 domain-containing protein	NA
UHGV-0186990_25	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0186990_25	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0186990_25	Structural annotation	NF033743	NA	NA
UHGV-0186990_26	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0186990_28	PHROG	phrog_16490	NA	unknown function
UHGV-0186990_28	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0186990_29	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0186990_30	UniRef90	UniRef90_A0A8F1B662	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0186990_30	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0186990_31	KOfam	K14059	int; integrase	NA
UHGV-0186990_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0186990_31	UniRef90	UniRef90_A0A212JT52	Putative Integrase family protein	NA
UHGV-0186990_31	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0186990_31	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0186990_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0186990_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0186990_31	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0186990_32	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0186990_32	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0186990_33	eggNOG-mapper	1121924.ATWH01000011_gene257	TM2 domain	NA
UHGV-0186990_33	COG	COG2314	NA	NA
UHGV-0186990_35	PHROG	phrog_33519	NA	unknown function
UHGV-0186990_35	eggNOG-mapper	1123405.AUMM01000015_gene2367	NA	NA
UHGV-0186990_35	Structural annotation	PF13958, NF010262, COG2337	NA	NA
UHGV-0186990_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0186990_36	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0186990_36	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0186990_36	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0186990_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0186990_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0186990_36	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0186990_38	Structural annotation	PF03885	NA	NA
UHGV-0186990_43	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0186990_43	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0186990_44	eggNOG-mapper	642492.Clole_0961	NA	NA
UHGV-0186990_44	Structural annotation	PF12286	NA	NA
UHGV-0186990_46	Structural annotation	NF041247	NA	NA
UHGV-0186990_47	Structural annotation	PF05082	NA	NA
UHGV-0186990_50	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0186990_50	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0186990_50	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0186990_50	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0186990_50	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0186990_50	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0186990_50	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0186990_50	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0186990_53	PHROG	phrog_5781	NA	unknown function
UHGV-0186990_53	UniRef90	UniRef90_A0A413FXK8	NA	NA
UHGV-0186990_53	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0186990_53	Pfam	PF14359	NA	DUF4406
UHGV-0186990_53	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0186990_53	Structural annotation	PF14359, MF_03036, COG3613	NA	NA
UHGV-0186990_54	PHROG	phrog_38832	NA	unknown function
UHGV-0186990_54	eggNOG-mapper	445972.ANACOL_00165	NA	NA
UHGV-0186990_54	Structural annotation	PF11717, TIGR02450	NA	NA