UHGV-0187073

Genome information

Genome length 42,339 bps

CDS count 72

Completeness 94.09% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0187073
vOTU ID	vOTU-009380
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593874
BioSample	SAMN09781755
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.09% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	73.32
Jumbo phage	No

Genome content
Genome length	42,339 bps
GC content	48.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	89.59%
Average CDS length	531.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0187073_1	PHROG	phrog_4433	NA	unknown function
UHGV-0187073_1	eggNOG-mapper	445970.ALIPUT_01221	DNA-templated transcription, initiation	NA
UHGV-0187073_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0187073_5	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0187073_5	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0187073_5	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0187073_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0187073_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0187073_8	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0187073_8	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0187073_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0187073_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0187073_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0187073_8	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0187073_10	PHROG	phrog_1847	NA	unknown function
UHGV-0187073_10	UniRef90	UniRef90_R6IA31	T5orf172 domain	NA
UHGV-0187073_10	eggNOG-mapper	718252.FP2_06880	NA	NA
UHGV-0187073_10	Pfam	PF13250	NA	DUF4041
UHGV-0187073_10	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0187073_10	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0187073_11	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0187073_11	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0187073_11	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0187073_12	KOfam	K14059	int; integrase	NA
UHGV-0187073_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0187073_12	UniRef90	UniRef90_UPI000F051A1D	tyrosine-type recombinase/integrase	NA
UHGV-0187073_12	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0187073_12	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0187073_12	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0187073_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0187073_12	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0187073_12	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0187073_13	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0187073_13	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0187073_14	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0187073_15	PHROG	phrog_16490	NA	unknown function
UHGV-0187073_16	PHROG	phrog_22984	NA	unknown function
UHGV-0187073_18	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0187073_19	PHROG	phrog_10091	holin	lysis
UHGV-0187073_19	UniRef90	UniRef90_A0A1Y4RHF4	Phage holin	NA
UHGV-0187073_19	eggNOG-mapper	445975.COLSTE_02144	Bacteriophage holin	NA
UHGV-0187073_19	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0187073_19	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0187073_19	COG	COG5546	NA	NA
UHGV-0187073_19	Structural annotation	COG5546	NA	NA
UHGV-0187073_20	PHROG	phrog_1863	NA	unknown function
UHGV-0187073_20	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0187073_21	PHROG	phrog_21357	endolysin	lysis
UHGV-0187073_21	UniRef90	UniRef90_A0A417S7C3	CHAP domain-containing protein	NA
UHGV-0187073_21	eggNOG-mapper	1118060.CAGZ01000031_gene1348	CHAP domain	NA
UHGV-0187073_21	Pfam	PF05257	CHAP domain	CHAP
UHGV-0187073_21	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0187073_21	Structural annotation	TIGR02594, COG3738	NA	NA
UHGV-0187073_22	UniRef90	UniRef90_R6I1X1	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	NA
UHGV-0187073_22	eggNOG-mapper	552398.HMPREF0866_01159	NA	NA
UHGV-0187073_24	PHROG	phrog_29409	NA	unknown function
UHGV-0187073_24	UniRef90	UniRef90_UPI001C128253	isoaspartyl peptidase	NA
UHGV-0187073_25	PHROG	phrog_37900	NA	unknown function
UHGV-0187073_25	UniRef90	UniRef90_UPI001C3EA4DF	NA	NA
UHGV-0187073_25	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0187073_25	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0187073_25	Structural annotation	PF19789, PF00041, COG3979	NA	NA
UHGV-0187073_26	eggNOG-mapper	1297617.JPJD01000059_gene2615	NA	NA
UHGV-0187073_27	PHROG	phrog_521	tail protein	tail
UHGV-0187073_27	UniRef90	UniRef90_A0A845SZU1	NA	NA
UHGV-0187073_27	eggNOG-mapper	1123511.KB905868_gene165	NA	NA
UHGV-0187073_27	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0187073_27	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0187073_27	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0187073_28	PHROG	phrog_6	baseplate protein	tail
UHGV-0187073_28	UniRef90	UniRef90_A0A1Q6KSX1	Phage tail protein	NA
UHGV-0187073_28	eggNOG-mapper	755731.Clo1100_3788	Baseplate J-like protein	NA
UHGV-0187073_28	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0187073_28	COG	COG3299	NA	NA
UHGV-0187073_28	Structural annotation	PF04865, PF21379, MF_04102, COG3299	NA	NA
UHGV-0187073_29	PHROG	phrog_120	baseplate protein	tail
UHGV-0187073_29	UniRef90	UniRef90_A0A316LLT3	NA	NA
UHGV-0187073_29	eggNOG-mapper	1347368.HG964405_gene5702	NA	NA
UHGV-0187073_29	Pfam	PF10934	NA	DUF2634
UHGV-0187073_29	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0187073_29	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0187073_30	PHROG	phrog_579	NA	unknown function
UHGV-0187073_30	UniRef90	UniRef90_A0A3Q8S761	NA	NA
UHGV-0187073_30	eggNOG-mapper	696281.Desru_1321	NA	NA
UHGV-0187073_30	Pfam	PF10844	NA	DUF2577
UHGV-0187073_30	Structural annotation	PF10844	NA	NA
UHGV-0187073_31	PHROG	phrog_400	tail protein	tail
UHGV-0187073_31	UniRef90	UniRef90_A0A174UIK6	Hydrolase	NA
UHGV-0187073_31	eggNOG-mapper	642492.Clole_2744	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0187073_31	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0187073_31	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0187073_32	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0187073_32	PHROG	phrog_380	endolysin	lysis
UHGV-0187073_32	UniRef90	UniRef90_A0A1Q6KSQ3	Peptidoglycan-binding protein LysM	NA
UHGV-0187073_32	eggNOG-mapper	742740.HMPREF9474_02343	Lysin motif	NA
UHGV-0187073_32	Pfam	PF01476	LysM domain	LysM
UHGV-0187073_32	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0187073_32	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0187073_33	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0187073_33	UniRef90	UniRef90_UPI001C126BBD	tape measure protein	NA
UHGV-0187073_33	eggNOG-mapper	742740.HMPREF9474_02344	tape measure	NA
UHGV-0187073_33	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0187073_33	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0187073_33	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0187073_33	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0187073_34	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0187073_34	UniRef90	UniRef90_A0A1Q6KSR3	Phage portal protein	NA
UHGV-0187073_34	eggNOG-mapper	861454.HMPREF9099_00618	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0187073_34	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0187073_34	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0187073_35	PHROG	phrog_365	tail protein	tail
UHGV-0187073_35	UniRef90	UniRef90_I0R4K9	PF09393 family protein	NA
UHGV-0187073_35	eggNOG-mapper	1095750.HMPREF9970_0279	Phage tail tube protein	NA
UHGV-0187073_35	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0187073_35	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0187073_36	PHROG	phrog_279	tail sheath	tail
UHGV-0187073_36	UniRef90	UniRef90_A0A1Q6KSN6	Phage tail protein	NA
UHGV-0187073_36	eggNOG-mapper	742740.HMPREF9474_02347	Phage tail sheath C-terminal domain	NA
UHGV-0187073_36	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0187073_36	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0187073_36	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0187073_37	PHROG	phrog_966	NA	unknown function
UHGV-0187073_37	eggNOG-mapper	1195236.CTER_3998	NA	NA
UHGV-0187073_38	PHROG	phrog_525	NA	unknown function
UHGV-0187073_38	eggNOG-mapper	1089548.KI783301_gene2610	NA	NA
UHGV-0187073_38	Pfam	PF20765	NA	DUF6838
UHGV-0187073_38	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0187073_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0187073_39	UniRef90	UniRef90_UPI001D05DAFC	HK97 gp10 family phage protein	NA
UHGV-0187073_39	eggNOG-mapper	1408823.AXUS01000024_gene2720	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0187073_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0187073_39	Structural annotation	PF04883, COG5005	NA	NA
UHGV-0187073_40	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0187073_40	UniRef90	UniRef90_A0A8E7UHT8	ABC transporter ATP-binding protein	NA
UHGV-0187073_40	eggNOG-mapper	742740.HMPREF9474_02351	NA	NA
UHGV-0187073_40	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0187073_41	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0187073_41	eggNOG-mapper	742740.HMPREF9474_02352	NA	NA
UHGV-0187073_41	Structural annotation	PF05135	NA	NA
UHGV-0187073_42	PHROG	phrog_544	major head protein	head and packaging
UHGV-0187073_42	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-0187073_42	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0187073_42	Structural annotation	PF06673, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0187073_43	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0187073_43	UniRef90	UniRef90_UPI0011DDD0C5	phage scaffolding protein	NA
UHGV-0187073_43	eggNOG-mapper	742740.HMPREF9474_02354	Phage minor structural protein GP20	NA
UHGV-0187073_43	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0187073_43	Structural annotation	PF06810	NA	NA
UHGV-0187073_44	PHROG	phrog_1233	NA	unknown function
UHGV-0187073_44	eggNOG-mapper	445972.ANACOL_01876	NA	NA
UHGV-0187073_45	PHROG	phrog_34144	NA	unknown function
UHGV-0187073_45	eggNOG-mapper	1118057.CAGX01000020_gene1617	NA	NA
UHGV-0187073_46	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0187073_46	UniRef90	UniRef90_A0A1Y4MGE1	Phage_Mu_F domain-containing protein	NA
UHGV-0187073_46	eggNOG-mapper	1121289.JHVL01000082_gene1211	Phage Mu protein F like protein	NA
UHGV-0187073_46	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0187073_46	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0187073_46	COG	COG2369	NA	NA
UHGV-0187073_46	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0187073_47	PHROG	phrog_64	portal protein	head and packaging
UHGV-0187073_47	UniRef90	UniRef90_A0A1Q6KSP7	Phage portal protein	NA
UHGV-0187073_47	eggNOG-mapper	742740.HMPREF9474_02357	Phage portal protein, SPP1 family	NA
UHGV-0187073_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0187073_47	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0187073_48	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0187073_48	PHROG	phrog_10250	NA	unknown function
UHGV-0187073_48	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0187073_48	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0187073_48	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0187073_48	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0187073_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-0187073_48	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0187073_49	UniRef90	UniRef90_UPI0018AC41F1	helix-turn-helix domain-containing protein	NA
UHGV-0187073_49	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0187073_49	Structural annotation	PF13542	NA	NA
UHGV-0187073_50	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0187073_50	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0187073_50	Structural annotation	PF05263, TIGR01636, COG1595	NA	NA
UHGV-0187073_52	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0187073_52	UniRef90	UniRef90_A0A1V5XFC1	Virulence-associated protein E	NA
UHGV-0187073_52	eggNOG-mapper	1235793.C809_02292	Virulence-associated protein E	NA
UHGV-0187073_52	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0187073_52	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0187073_52	Structural annotation	PF05272, MF_00016, NF005477, COG5545	NA	NA
UHGV-0187073_53	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0187073_53	PHROG	phrog_11992	NA	unknown function
UHGV-0187073_53	UniRef90	UniRef90_A0A6N2TU46	DNA primase	NA
UHGV-0187073_53	eggNOG-mapper	1256908.HMPREF0373_03434	CHC2 zinc finger	NA
UHGV-0187073_53	PADLOC	drt-cluster192	DRT	DRT
UHGV-0187073_53	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0187073_53	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0187073_53	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0187073_54	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0187073_54	UniRef90	UniRef90_R6N0P8	ERCC4 domain-containing protein	NA
UHGV-0187073_54	eggNOG-mapper	1304866.K413DRAFT_0825	resolution of meiotic recombination intermediates	NA
UHGV-0187073_54	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0187073_54	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0187073_54	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0187073_55	PHROG	phrog_18107	NA	unknown function
UHGV-0187073_55	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0187073_55	Structural annotation	PF05037	NA	NA
UHGV-0187073_57	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0187073_57	UniRef90	UniRef90_A0A8J6P193	AAA family ATPase	NA
UHGV-0187073_57	eggNOG-mapper	1449050.JNLE01000005_gene3946	AAA domain	NA
UHGV-0187073_57	Pfam	PF13479	AAA domain	AAA_24
UHGV-0187073_57	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0187073_60	PHROG	phrog_18716	NA	unknown function
UHGV-0187073_60	UniRef90	UniRef90_A0A1J0GJP7	NA	NA
UHGV-0187073_60	eggNOG-mapper	665959.HMPREF1013_00856	NA	NA
UHGV-0187073_60	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0187073_60	Structural annotation	PF18909	NA	NA
UHGV-0187073_68	PHROG	phrog_38832	NA	unknown function
UHGV-0187073_68	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0187073_70	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0187073_70	UniRef90	UniRef90_UPI0006A41431	DNA cytosine methyltransferase	NA
UHGV-0187073_70	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0187073_70	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0187073_70	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0187073_71	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0187073_71	PHROG	phrog_30550	NA	unknown function
UHGV-0187073_71	UniRef90	UniRef90_R6CIF0	Hydrolase_2 domain-containing protein	NA
UHGV-0187073_71	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0187073_71	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0187073_71	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0187073_72	PHROG	phrog_27197	NA	unknown function
UHGV-0187073_72	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0187073_72	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0187073_72	Structural annotation	NF007410	NA	NA